DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34002 and Clec18a

DIOPT Version :9

Sequence 1:NP_001034029.2 Gene:CG34002 / 3885644 FlyBaseID:FBgn0054002 Length:350 Species:Drosophila melanogaster
Sequence 2:XP_038954171.1 Gene:Clec18a / 307851 RGDID:1559899 Length:497 Species:Rattus norvegicus


Alignment Length:297 Identity:65/297 - (21%)
Similarity:96/297 - (32%) Gaps:115/297 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GLLLLFGLNLVFLLPETNYCHLKNCPADKKLPHIGCNNSGSWSPKCGKDPKIIDVPKHIKK---- 70
            |||||.                        ||.:|...:....|:.   ||.:.:.:.:.:    
  Rat    39 GLLLLL------------------------LPLLGITWTEVQPPQL---PKQVPIVQALSRKESF 76

  Fly    71 LILNHHNTYRDIVAGGQMHRLPIAARMLKLKWDHELALLATILVKRCDLQPTDHCISTEE----- 130
            |||..||..|     .|:|  |.||.|.::.|...||.||......|....|.:..:|..     
  Rat    77 LILTTHNRLR-----SQVH--PSAANMQRMDWSESLAQLAQARAALCGTSATPNLAATLRNTPDV 134

  Fly   131 --------FSSPSYHAVYNKFKAKEDTFRIVRSQLNAWYD---QYKHVSSSSLIDGLSTAKKEIG 184
                    ..|.|:..|                 :|.|:.   ||:|.|:.      ........
  Rat   135 GWNVQLLPMGSASFVEV-----------------VNVWFAEGLQYRHGSAE------CAHNATCA 176

  Fly   185 HFLRMIVGPSNRLGCAIASIEKGGW--------THQWLACLYSCSPQKNSLLYEYSG------KP 235
            |:.:::...|::|||        ||        ..:...|.|  ||..|   :|.:|      |.
  Rat   177 HYTQLVWATSSQLGC--------GWQPCFVDQVATEAFVCAY--SPGGN---WEINGKMIAPYKK 228

  Fly   236 GVY---CTTGINGKFQ------NLCNDTEPVKDCMHS 263
            |.:   ||..::|.|:      .||.  .|...|..|
  Rat   229 GPWCSLCTASVSGCFKAWDHAGGLCE--VPRNPCRMS 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34002NP_001034029.2 SCP_euk 69..219 CDD:240180 37/177 (21%)
Clec18aXP_038954171.1 CAP_euk 77..211 CDD:349399 38/173 (22%)
CLECT 361..485 CDD:153057
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166344550
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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