DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG34039 and Commd4

DIOPT Version :10

Sequence 1:NP_001034012.2 Gene:CG34039 / 3885643 FlyBaseID:FBgn0054039 Length:198 Species:Drosophila melanogaster
Sequence 2:XP_063121825.1 Gene:Commd4 / 363068 RGDID:1306104 Length:201 Species:Rattus norvegicus


Alignment Length:191 Identity:65/191 - (34%)
Similarity:102/191 - (53%) Gaps:22/191 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MKFRFCGEGDCPDWVLAEIISTLSNLSIENLEQLSDLVAQRICGETFEEAKIKSLTSTLTNEG-- 63
            |:|||||:.||||||||| ||||:.:|...|..|...|.:.:.|:..:..||..||:....|.  
  Rat     1 MRFRFCGDLDCPDWVLAE-ISTLAKISSVKLRLLCSQVLKELLGQGIDYEKILKLTADAKFESGD 64

  Fly    64 -KTAVACINFMLTSAARYSCSESIFGEEIQQLGLPKDHAAAMCRVLQKHSATIRQTLINKSFRIN 127
             |..||.::|:|:|||::|........|:|||||||:||.::||..::..:.:::.|...|.|:|
  Rat    65 VKATVAVLSFILSSAAKHSVDSDSLSSELQQLGLPKEHATSLCRCYEEKQSPLQEHLRACSLRVN 129

  Fly   128 ELTSVRDISTPGQTPPNYATLELKISQELVDGLPKDTTHVLNIDRTQMKALLAELKLARDV 188
            .|.||.            ..::..:|..|:..:.:...|:      |::.:.|...||:.|
  Rat   130 RLASVG------------WRVDYTLSSSLLHSVEEPMVHL------QLQLVPAPGSLAQHV 172

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34039NP_001034012.2 Commd 38..190 CDD:471425 43/154 (28%)
Commd4XP_063121825.1 None

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