DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG34049 and Crispld1

DIOPT Version :9

Sequence 1:NP_001033871.2 Gene:CG34049 / 3885620 FlyBaseID:FBgn0054049 Length:306 Species:Drosophila melanogaster
Sequence 2:NP_001128435.1 Gene:Crispld1 / 316482 RGDID:1564813 Length:500 Species:Rattus norvegicus


Alignment Length:157 Identity:43/157 - (27%)
Similarity:63/157 - (40%) Gaps:40/157 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 QAVLRETNK-----YRRLHNANPLKMDEKLCSYAQEWADHLADLNKLETRPN---PLYGENI--- 200
            |::|...||     |....|...:..|.:|...|:.||:...    .|..|.   |..|:|:   
  Rat    63 QSILDLHNKLRSQVYPAASNMEYMTWDVELERSAESWAETCL----WEHGPTSLLPSIGQNLGAH 123

  Fly   201 -MRVRRSKFSVDQILKLWYQE----KYNYDYLKPGFNLY--TG----HFTQLVWRESEFLGVGV- 253
             .|.|...|.|    :.||.|    .|.|::....:..:  :|    |:||:||..|..:|..: 
  Rat   124 WGRYRPPTFHV----QAWYDEVRDFSYPYEHECDPYCPFRCSGPVCTHYTQVVWATSSRIGCAIN 184

  Fly   254 ACDVSSIW---------IVCNYHPPGN 271
            .|...:||         :||||.|.||
  Rat   185 LCHNMNIWGQIWPKAVYLVCNYSPKGN 211

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG34049NP_001033871.2 SCP_GAPR-1_like 146..272 CDD:240182 43/157 (27%)
Crispld1NP_001128435.1 SCP_euk 63..207 CDD:240180 39/151 (26%)
LCCL 291..375 CDD:128866
LCCL 394..492 CDD:281766
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2340
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1528782at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.