DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimB3 and Stab1

DIOPT Version :10

Sequence 1:NP_001033905.1 Gene:NimB3 / 3885611 FlyBaseID:FBgn0054003 Length:122 Species:Drosophila melanogaster
Sequence 2:XP_008769275.1 Gene:Stab1 / 100363145 RGDID:2324745 Length:2630 Species:Rattus norvegicus


Alignment Length:74 Identity:17/74 - (22%)
Similarity:28/74 - (37%) Gaps:20/74 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 GSGICYRTLTVETINPNSRNRQFSYCCDGYVNKGTSQNLKCEPICSEDCS-NGLCLAPEECECAP 108
            |||.|                   :|.:|:........|:.:|:|:..|: ..:|.....|||:.
  Rat  2094 GSGSC-------------------FCDEGWTGPRCDVQLELQPVCTPPCAPQAVCRVGNSCECSL 2139

  Fly   109 GYYRSNKRC 117
            ||....:.|
  Rat  2140 GYEGDGRVC 2148

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB3NP_001033905.1 PLN03223 <49..>106 CDD:215637 9/57 (16%)
Stab1XP_008769275.1 FAS1 502..647 CDD:441906
EGF_3 834..863 CDD:463759
EGF_3 918..949 CDD:463759
EGF_3 955..991 CDD:463759
Fasciclin <1100..1180 CDD:396845
Fasciclin 1224..1313 CDD:470649
EGF_3 1519..1555 CDD:463759
EGF_3 1561..1595 CDD:463759
EGF_3 1604..1641 CDD:463759
Fasciclin 1666..1770 CDD:396845
Fasciclin 1796..1926 CDD:396845
EGF_Lam 2037..2082 CDD:238012
EGF_3 2154..2189 CDD:463759
EGF_3 2195..2232 CDD:463759
Link_Domain 2267..2359 CDD:470631
FAS1 2426..2521 CDD:214719
Fasciclin 391..494 CDD:470649
Blue background indicates that the domain is not in the aligned region.

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