DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr13 and lrit1a

DIOPT Version :9

Sequence 1:NP_001033956.2 Gene:dpr13 / 3885598 FlyBaseID:FBgn0034286 Length:419 Species:Drosophila melanogaster
Sequence 2:NP_001018174.2 Gene:lrit1a / 553943 ZFINID:ZDB-GENE-040924-5 Length:643 Species:Danio rerio


Alignment Length:197 Identity:40/197 - (20%)
Similarity:67/197 - (34%) Gaps:56/197 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AALIFIIAYIAAC-GICDHTASA---SPGGGKTV--AATMTTPASEPSVRH-----INQNLIMSQ 76
            :.::|..|.:..| |...|||.|   |..|...:  ..|:..|..|.:.|.     :|..:::..
Zfish   237 SGVLFSDAELRRCQGPRVHTAVARVRSAVGNNVLLRCGTVGVPIPELAWRRADGKPLNGTVLLEN 301

  Fly    77 SKEG---EPVPVPQ-------PYAQSAASAGGS-----SITSFDSTNVIDGQSQPTP-------- 118
            ||||   ..:.||.       .|...|.:..||     |:...|:..:.:....|.|        
Zfish   302 SKEGIVWSILSVPAVSYRDTGKYICKATNYAGSAEAVISLIINDAPKMENPTLDPKPKLKSKKPN 366

  Fly   119 THLQEAVLQTHSHSRIQ-----------AKDTAGPYPIPVHRPEPVENHLEANNGIEGGMESLFG 172
            |.::.|..:.|..:.:.           .....||||           .:|::|.....|.:...
Zfish   367 TMVKAAYQEKHIATYVSPTPKNGLPLSGTVSYTGPYP-----------GMESDNAANSRMNTQTA 420

  Fly   173 TP 174
            :|
Zfish   421 SP 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr13NP_001033956.2 V-set 180..276 CDD:284989
IG_like 182..262 CDD:214653
IG_like 285..362 CDD:214653
IGc2 292..361 CDD:197706
lrit1aNP_001018174.2 leucine-rich repeat 61..84 CDD:275378
LRR_8 63..119 CDD:290566
LRR_RI <77..175 CDD:238064
leucine-rich repeat 85..108 CDD:275378
LRR_8 108..167 CDD:290566
leucine-rich repeat 109..132 CDD:275378
leucine-rich repeat 133..156 CDD:275378
leucine-rich repeat 157..170 CDD:275378
LRRCT 199..243 CDD:214507 1/5 (20%)
I-set 252..343 CDD:254352 22/90 (24%)
Ig 259..333 CDD:299845 16/73 (22%)
fn3 448..515 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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