DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr13 and ncam1a

DIOPT Version :9

Sequence 1:NP_001033956.2 Gene:dpr13 / 3885598 FlyBaseID:FBgn0034286 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_009293555.1 Gene:ncam1a / 30447 ZFINID:ZDB-GENE-990415-31 Length:1010 Species:Danio rerio


Alignment Length:382 Identity:84/382 - (21%)
Similarity:127/382 - (33%) Gaps:127/382 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    50 KTVAATMTTPASEPSVRHINQNLIMSQSKEGEP----------------VPVPQPYAQSAASAGG 98
            ||..::.|......:|.|......:::|.|.|.                .|.||.:.:.      
Zfish    71 KTDESSSTLTIYNANVDHAGMYKCVAKSGEKESQGTIIVKIFQKLTFQYAPSPQEFNEG------ 129

  Fly    99 SSITSFDSTNVI-DGQSQPTPTHLQEAVLQTHSHSRIQAKDTAGPYPIPVHRPEP-------VEN 155
                  |..::| |..|.|.||     ::..:...|||              ||.       ..|
Zfish   130 ------DDADIICDVISSPPPT-----IIWRYKKMRIQ--------------PETDVRLKVLSNN 169

  Fly   156 HLEANNGI---EGGMESLFGTPMYFGTENSTVVT-------------TQIGATAHV------PCT 198
            ||:. .||   :.|..:..|..|..|..:..|:.             |::.|||.:      .|.
Zfish   170 HLQI-RGIKKTDEGDYTCEGRIMARGEIDLRVIKVIVNVLPSIRTRYTELNATADINQAVTLACH 233

  Fly   199 VHHIGEGVVSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSEDWT-LQIKFVQLRDAGVYEC--- 259
            .....|..|.|.|         |.|...|||::|.     :||.: |.||.|...|.|.|:|   
Zfish   234 ADGYPEPTVKWAR---------GNTELESDEKYSL-----NEDGSELTIKDVNKLDEGDYKCIAR 284

  Fly   260 ----QVSTHPPTSIFLHLSV--------------VEARAEITGPPIRYLTPGSTLRLQCRV-VQN 305
                :.|.....::|:...:              :....|.||.|    ||........|| .:|
Zfish   285 NKAGERSEEVTLNVFVQPKITFLENQTASELEEQITLTCEATGDP----TPNIIWSFGRRVFTEN 345

  Fly   306 TEASEYIFWYHDNRMINYDIDRGINVSTEPDFQSSELTIQRTRREHSGNFTCVASNT 362
            .:||    |....:..:.|   | ||....|.:.|.||::..:...:|.:.|.|.|:
Zfish   346 EQAS----WTRPEKHKSLD---G-NVVVRSDARVSSLTLKYVQFTDAGQYLCTARNS 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr13NP_001033956.2 V-set 180..276 CDD:284989 28/136 (21%)
IG_like 182..262 CDD:214653 26/106 (25%)
IG_like 285..362 CDD:214653 20/77 (26%)
IGc2 292..361 CDD:197706 18/69 (26%)
ncam1aXP_009293555.1 Ig 20..112 CDD:299845 8/40 (20%)
I-set 21..111 CDD:254352 8/39 (21%)
IG_like 121..200 CDD:214653 24/110 (22%)
IGc2 128..189 CDD:197706 18/92 (20%)
Ig 208..301 CDD:299845 27/106 (25%)
IG_like 219..298 CDD:214653 25/92 (27%)
Ig 300..406 CDD:299845 24/107 (22%)
IG_like 308..406 CDD:214653 24/99 (24%)
ig 413..498 CDD:278476
IG_like 415..498 CDD:214653
fn3 505..589 CDD:278470
FN3 624..715 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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