DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr13 and Lsamp

DIOPT Version :9

Sequence 1:NP_001033956.2 Gene:dpr13 / 3885598 FlyBaseID:FBgn0034286 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_038944182.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:270 Identity:61/270 - (22%)
Similarity:97/270 - (35%) Gaps:98/270 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   178 GTENSTVVTTQIGATAHVPCTVHHIGEGVVSWIRKKDYHLLTVGLTTYSSDERFSATHLKHSEDW 242
            ||:|   :|.:.|.||.:.|.|.. ....|:|:.:..  ::..|...:|.|.|.. ...:|:.::
  Rat    54 GTDN---ITVRQGDTAILRCVVED-KNSKVAWLNRSG--IIFAGHDKWSLDPRVE-LEKRHALEY 111

  Fly   243 TLQIKFVQLRDAGVYECQVST-HPPTSIFLHLSV--------------VEARAEIT------GPP 286
            :|:|:.|.:.|.|.|.|.|.| |.|.:..::|.|              |...:.:|      |.|
  Rat   112 SLRIQKVDVYDEGSYTCSVQTQHEPKTSQVYLIVQVPPKISNISSDVTVNEGSNVTLVCMANGRP 176

  Fly   287 -----IRYLTP---------------GSTL----RLQCRVVQNTEASEY---------------- 311
                 .|:|||               |.|.    :.:|:......:::.                
  Rat   177 EPVITWRHLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSADVKQVKVTVNYPPTITES 241

  Fly   312 ------------------------IFWYHDNRMINYDIDRGINV-STEPDFQSSELTIQRTRREH 351
                                    ..||.|:..||  ...|:.: |||   ..|.||:.....||
  Rat   242 KSNEATTGRQASLKCEASAVPAPDFEWYRDDTRIN--SANGLEIKSTE---GQSSLTVTNVTEEH 301

  Fly   352 SGNFTCVASN 361
            .||:||||:|
  Rat   302 YGNYTCVAAN 311

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr13NP_001033956.2 V-set 180..276 CDD:284989 27/110 (25%)
IG_like 182..262 CDD:214653 20/79 (25%)
IG_like 285..362 CDD:214653 29/142 (20%)
IGc2 292..361 CDD:197706 24/128 (19%)
LsampXP_038944182.1 Ig 55..145 CDD:416386 27/96 (28%)
FR1 55..71 CDD:409353 6/18 (33%)
Ig strand A' 56..62 CDD:409353 2/8 (25%)
Ig strand B 64..72 CDD:409353 3/7 (43%)
CDR1 72..76 CDD:409353 1/4 (25%)
FR2 77..84 CDD:409353 2/6 (33%)
Ig strand C 77..83 CDD:409353 2/5 (40%)
CDR2 85..95 CDD:409353 1/11 (9%)
Ig strand C' 87..90 CDD:409353 0/2 (0%)
Ig strand C' 92..95 CDD:409353 0/2 (0%)
FR3 96..131 CDD:409353 11/35 (31%)
Ig strand D 100..107 CDD:409353 1/7 (14%)
Ig strand E 110..116 CDD:409353 1/5 (20%)
Ig strand F 123..131 CDD:409353 3/7 (43%)
CDR3 132..136 CDD:409353 2/3 (67%)
Ig strand G 136..145 CDD:409353 2/8 (25%)
FR4 138..145 CDD:409353 1/6 (17%)
Ig_3 148..218 CDD:404760 11/69 (16%)
Ig strand A' 155..160 CDD:409353 0/4 (0%)
Ig strand B 166..173 CDD:409353 1/6 (17%)
Ig strand C 179..184 CDD:409353 0/4 (0%)
Ig strand D 190..193 CDD:409353 0/2 (0%)
Ig strand E 197..203 CDD:409353 0/5 (0%)
Ig strand F 210..217 CDD:409353 1/6 (17%)
Ig strand G 224..232 CDD:409353 0/7 (0%)
Ig_3 235..311 CDD:404760 20/80 (25%)
Ig strand B 252..256 CDD:409353 0/3 (0%)
Ig strand C 265..269 CDD:409353 0/3 (0%)
Ig strand E 290..294 CDD:409353 2/3 (67%)
Ig strand F 304..309 CDD:409353 3/4 (75%)
Ig strand G 318..321 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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