DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr13 and dscam

DIOPT Version :9

Sequence 1:NP_001033956.2 Gene:dpr13 / 3885598 FlyBaseID:FBgn0034286 Length:419 Species:Drosophila melanogaster
Sequence 2:XP_031751619.1 Gene:dscam / 100216449 XenbaseID:XB-GENE-921689 Length:2039 Species:Xenopus tropicalis


Alignment Length:507 Identity:94/507 - (18%)
Similarity:154/507 - (30%) Gaps:219/507 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PASSGLY------RIKNGRVLDRL--QKPAALIFIIAYIAACGICDHTASASPGGGKTVAATMTT 58
            |:.||.|      ...|..|:..|  ::|..:          .|......:|.|...::|.:: |
 Frog   285 PSDSGSYVCEVWNNYGNAEVIGSLYVKQPLKV----------NISPRKVKSSVGSQISLACSV-T 338

  Fly    59 PASEPSVRHINQNLIMSQSKEGEPVPVPQPYAQSAASAGGS-SITSFD-STNVIDGQSQPTPTHL 121
            ...:|.         :|..:.||.:           :||.: .||..: .|.::||         
 Frog   339 GTDDPD---------LSWYRNGEII-----------NAGNNVRITGVNRETLIMDG--------- 374

  Fly   122 QEAVLQTHSHSRIQAKDTAGPYPIPVHRPEPVENHLEANNGIEGGMESLFGTPMYFGTENSTVVT 186
                         .||..:|.|...|.|.:     :.|.:.::..:|.  |||......:..||:
 Frog   375 -------------MAKSDSGAYQCFVRREK-----MSAQDYVQVVLED--GTPKIISAFSEKVVS 419

  Fly   187 TQIGATAHVPCTVHHIGEGVVSW------IRKKDYHLLTVGLTTYSSDERFSATHLKHSEDWTLQ 245
            .  |....:.|.|.......::|      |.|...|.::..:|:..:...:            |.
 Frog   420 P--GEPVSLMCNVKGTPLPTITWTLDDDPIIKNGNHRISQLITSEGNVVSY------------LN 470

  Fly   246 IKFVQLRDAGVYECQVSTHPPTSIFLHLSVVEARAEITGP----PIRYLT--PGSTLRLQCRVVQ 304
            |...|:||.|||.|..:......::      :||..:.||    |::.:|  .|....:.|||:.
 Frog   471 ITNTQVRDGGVYRCTANNSAGVVLY------QARINVRGPASIRPMKNITAIAGRDTYIHCRVIG 529

  Fly   305 NTEASEYIFWYHDNRMINY--------------------DIDRG---INVSTEP----------- 335
            ....|  |.||.::.::.:                    |:|.|   .||..:|           
 Frog   530 YPYYS--IKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKDVDEGEYMCNVLVQPQLSTSQSVHVT 592

  Fly   336 --------------------------------------------------------DFQSSELTI 344
                                                                    ||.|| |.|
 Frog   593 VKVPPFIQPFESQRFSIGQRVFIPCVVVSGDLPITITWQKDGRPIPASLGVTIDNIDFTSS-LRI 656

  Fly   345 QRTRREHSGNFTCVASNTQPASVLVHIFKGDNPAAMYHGHVGGSTKTTQSQL 396
            ......|:||:||:|.|              :.||:.|          ||||
 Frog   657 SNLSLMHNGNYTCIARN--------------DAAAVEH----------QSQL 684

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr13NP_001033956.2 V-set 180..276 CDD:284989 19/101 (19%)
IG_like 182..262 CDD:214653 19/85 (22%)
IG_like 285..362 CDD:214653 29/172 (17%)
IGc2 292..361 CDD:197706 26/158 (16%)
dscamXP_031751619.1 Ig 26..121 CDD:416386
Ig strand A' 33..37 CDD:409353
Ig strand B 40..49 CDD:409353
Ig strand C 55..61 CDD:409353
Ig strand C' 63..66 CDD:409353
Ig strand D 72..75 CDD:409353
Ig strand E 80..85 CDD:409353
Ig strand F 98..106 CDD:409353
Ig strand G 109..121 CDD:409353
Ig 124..217 CDD:416386
Ig strand A' 127..136 CDD:409353
Ig strand B 140..147 CDD:409353
Ig strand C 157..162 CDD:409353
Ig strand C' 164..167 CDD:409353
Ig strand D 172..176 CDD:409353
Ig strand E 179..185 CDD:409353
Ig strand F 193..201 CDD:409353
Ig strand G 205..217 CDD:409353
Ig strand A 225..228 CDD:409353
Ig strand A' 234..237 CDD:409353
IG_like 236..310 CDD:214653 7/24 (29%)
Ig strand B 242..249 CDD:409353
Ig strand C 255..260 CDD:409353
Ig strand C' 262..264 CDD:409353
Ig strand D 270..274 CDD:409353
Ig strand E 276..280 CDD:409353
Ig strand F 289..297 CDD:409353 2/7 (29%)
Ig strand G 300..310 CDD:409353 3/9 (33%)
Ig 313..395 CDD:416386 23/139 (17%)
Ig strand A 314..319 CDD:409353 0/14 (0%)
Ig strand A' 322..326 CDD:409353 0/3 (0%)
Ig strand B 329..339 CDD:409353 1/10 (10%)
Ig strand C 344..350 CDD:409353 1/14 (7%)
Ig strand C' 351..354 CDD:409353 2/2 (100%)
Ig strand E 368..374 CDD:409353 1/5 (20%)
Ig strand F 381..389 CDD:409353 3/7 (43%)
Ig 406..501 CDD:416386 23/114 (20%)
Ig strand A 406..409 CDD:409353 2/2 (100%)
Ig strand A' 415..419 CDD:409353 1/3 (33%)
Ig strand B 422..431 CDD:409353 1/8 (13%)
Ig strand C 436..442 CDD:409353 1/5 (20%)
Ig strand C' 444..447 CDD:409353 0/2 (0%)
Ig strand D 452..460 CDD:409353 1/7 (14%)
Ig strand E 464..473 CDD:409353 2/20 (10%)
Ig strand F 480..488 CDD:409353 4/7 (57%)
Ig strand G 491..501 CDD:409353 2/15 (13%)
Ig 504..593 CDD:416386 17/90 (19%)
Ig strand A 505..507 CDD:409353 0/1 (0%)
Ig strand A' 512..516 CDD:409353 1/3 (33%)
Ig strand B 519..526 CDD:409353 0/6 (0%)
Ig strand C 533..539 CDD:409353 3/7 (43%)
Ig strand C' 540..542 CDD:409353 0/1 (0%)
Ig strand D 549..553 CDD:409353 0/3 (0%)
Ig strand E 557..563 CDD:409353 0/5 (0%)
Ig strand F 571..579 CDD:409353 3/7 (43%)
Ig strand G 583..593 CDD:409353 0/9 (0%)
Ig 596..686 CDD:416386 20/114 (18%)
Ig strand A 597..599 CDD:409353 0/1 (0%)
Ig strand A' 604..608 CDD:409353 0/3 (0%)
Ig strand B 611..620 CDD:409353 0/8 (0%)
Ig strand C 625..632 CDD:409353 0/6 (0%)
Ig strand C' 634..636 CDD:409353 0/1 (0%)
Ig strand D 643..648 CDD:409353 0/4 (0%)
Ig strand E 651..658 CDD:409353 4/7 (57%)
Ig strand F 665..673 CDD:409353 5/7 (71%)
Ig strand G 676..685 CDD:409353 7/19 (37%)
Ig_DSCAM 689..784 CDD:409397
Ig strand B 707..711 CDD:409397
Ig strand C 720..724 CDD:409397
Ig strand E 749..753 CDD:409397
Ig strand F 763..768 CDD:409397
Ig strand G 777..780 CDD:409397
Ig_DSCAM 785..885 CDD:409398
Ig strand B 805..809 CDD:409398
Ig strand C 818..822 CDD:409398
Ig strand E 849..853 CDD:409398
Ig strand F 863..868 CDD:409398
Ig strand G 876..879 CDD:409398
FN3 886..980 CDD:238020
FN3 987..1084 CDD:238020
FN3 1093..1185 CDD:238020
FN3 1190..1279 CDD:238020
Ig_3 <1303..1364 CDD:404760
Ig strand B 1304..1311 CDD:409353
Ig strand C 1317..1322 CDD:409353
Ig strand C' 1327..1333 CDD:409353
Ig strand D 1337..1341 CDD:409353
Ig strand E 1343..1347 CDD:409353
Ig strand F 1356..1364 CDD:409353
Ig strand G 1367..1377 CDD:409353
FN3 1381..1471 CDD:238020
FN3 1497..1568 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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