DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Octbeta3R and chrm1a

DIOPT Version :10

Sequence 1:NP_001034048.2 Gene:Octbeta3R / 3885573 FlyBaseID:FBgn0250910 Length:1256 Species:Drosophila melanogaster
Sequence 2:XP_073777932.1 Gene:chrm1a / 792708 ZFINID:ZDB-GENE-090410-9 Length:465 Species:Danio rerio


Alignment Length:499 Identity:114/499 - (22%)
Similarity:198/499 - (39%) Gaps:134/499 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   117 NGSDIAVDNQAELEESWLDLSLLLLKGFIFSSIILAAVLGNALVIISVQRNRKLRVITNYFVVSL 181
            ||:|..:....    ||....:.    ||...:.|..:.||.||:||.:.|..||.::|||::||
Zfish     8 NGTDSPIPGFI----SWKTAMIT----FITVPLSLITITGNVLVMISFRVNPLLRTVSNYFLLSL 64

  Fly   182 AMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPL 246
            |:||:::...:|....:..|..| |..|...|:|:.::|...|.||:::|..||:|||.:::|||
Zfish    65 AVADVILGSISMNLYTTYILLNG-WTLGNLACDVWLAVDYVASNASVMNLLAISIDRYLSVMRPL 128

  Fly   247 EYPLNMTHKTVCFMLANVWILPALISFTPIFLGW-YTTEEHLREISLHPDQCS--FVVNKAYALI 308
            .|....|.|....|::..|.: :.:.:.|..|.| |...|.    ::..::||  |:........
Zfish   129 TYRAKRTPKRAMIMISLAWTI-SFVIWAPAILFWQYIVGER----TVQENECSIQFLSEPVITFG 188

  Fly   309 SSSVSFWIPGIVMLVMYWRIFKEAIRQRKALSRTSSNILLNSVHMGHTQQPTSLSYLHPSDCDLN 373
            ::..:|::|..||:.:|||:::|..::.:.|:.      |.:...|.|.               |
Zfish   189 TAIAAFYLPVSVMVALYWRVYRETEKRSQKLAG------LMASQGGRTG---------------N 232

  Fly   374 ATSAREETHSALSNLEDMLQPATDEDDDRDECDELRVPSPPPRRLSRSSIDLRDLEQERYEKVTH 438
            | |.|....|:.|| || ::|.||                                         
Zfish   233 A-SQRSCQSSSRSN-ED-VRPQTD----------------------------------------- 253

  Fly   439 TDSAPSMMALQQQQPSHNQLQPPAPVFNPQ---IWTEGKMIPSKELDKEHSHPNGPQQQLSLTSG 500
                      ||||...|:.:|..|.|..:   .|.  |....:::...::..|.||.....:..
Zfish   254 ----------QQQQQLRNEPRPVCPSFTHRTAACWK--KQREREDISNSYATNNHPQVDFISSRT 306

  Fly   501 SGNSEPEPESTAYRVFGGLNSDESEGNDLYDTHLPLAEDNKELKRLIEDNYLYFKRQTGGTIISG 565
            ..|::..|.         :..|:|..|..:|..:..::.::....|:.                 
Zfish   307 DHNNKYIPL---------VGMDKSAANKPHDATMNNSDQSESPNSLMN----------------- 345

  Fly   566 PGGGKYAALSETDFIRLKAGAAACGRKAFASS---DSEFLRTIS 606
                  .|.::...:.|.||..:  |||..||   :.:..||:|
Zfish   346 ------PATTQASALLLNAGQRS--RKARTSSLIKEKKAARTLS 381

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta3RNP_001034048.2 7tmA_DmOct-betaAR-like 142..>338 CDD:320194 61/198 (31%)
TM helix 1 142..167 CDD:320194 9/24 (38%)
TM helix 2 174..200 CDD:320194 9/25 (36%)
TM helix 3 213..243 CDD:320194 12/29 (41%)
TM helix 4 255..278 CDD:320194 4/22 (18%)
TM helix 5 302..331 CDD:320194 7/28 (25%)
7tm_GPCRs <1161..1234 CDD:475119
TM helix 6 1167..1189 CDD:410628
TM helix 7 1202..1227 CDD:410628
chrm1aXP_073777932.1 None
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.