DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta3R and LOC567498

DIOPT Version :10

Sequence 1:NP_001034048.2 Gene:Octbeta3R / 3885573 FlyBaseID:FBgn0250910 Length:1256 Species:Drosophila melanogaster
Sequence 2:NP_001430360.1 Gene:LOC567498 / 567498 -ID:- Length:398 Species:Danio rerio


Alignment Length:211 Identity:84/211 - (39%)
Similarity:122/211 - (57%) Gaps:25/211 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 GFIFSSIILAAVLGNALVIISVQRNRKLR-VITNYFVVSLAMADMLVALCAMTFNASVELSGGKW 206
            |...|.::|..:|||.:|..:|.|.|.|| .:||.|:|||||:|:|||:..|.:.|:.|:: |.|
Zfish    25 GCALSLLVLWTLLGNFMVCAAVLRFRHLRGKVTNVFIVSLAMSDLLVAVLVMPWKAATEVT-GHW 88

  Fly   207 MFGPFMCNVYNSLDVYFSTASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCFMLANVWILPALI 271
            .||.| |..:.:.|:..||||||:||.||:|||:||..|.:|...|..:....|::..||:...|
Zfish    89 AFGSF-CECWVAFDIMCSTASILNLCVISLDRYWAISDPFQYERKMNRRVALVMVSVTWIVSVAI 152

  Fly   272 SFTPIFLGW------------YTTEEHLREISLHPDQCSFVVNKAYALISSSVSFWIPGIVMLVM 324
            ||.|:.|.|            :||:|          .|...:::.||:.||.:||:||..||||.
Zfish   153 SFVPVQLNWHRADLDTVNTSNWTTKE----------MCDSSLSRTYAISSSLISFYIPVAVMLVT 207

  Fly   325 YWRIFKEAIRQRKALS 340
            |.||::.|..|.|::|
Zfish   208 YTRIYRIAQIQIKSIS 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta3RNP_001034048.2 7tmA_DmOct-betaAR-like 142..>338 CDD:320194 82/207 (40%)
TM helix 1 142..167 CDD:320194 8/23 (35%)
TM helix 2 174..200 CDD:320194 14/25 (56%)
TM helix 3 213..243 CDD:320194 16/29 (55%)
TM helix 4 255..278 CDD:320194 7/22 (32%)
TM helix 5 302..331 CDD:320194 15/28 (54%)
7tm_GPCRs <1161..1234 CDD:475119
TM helix 6 1167..1189 CDD:410628
TM helix 7 1202..1227 CDD:410628
LOC567498NP_001430360.1 None
Blue background indicates that the domain is not in the aligned region.

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