DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta3R and htr1d

DIOPT Version :10

Sequence 1:NP_001034048.2 Gene:Octbeta3R / 3885573 FlyBaseID:FBgn0250910 Length:1256 Species:Drosophila melanogaster
Sequence 2:NP_001139158.1 Gene:htr1d / 556429 ZFINID:ZDB-GENE-090409-3 Length:386 Species:Danio rerio


Alignment Length:284 Identity:90/284 - (31%)
Similarity:139/284 - (48%) Gaps:33/284 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    99 SSDSTFELLSTVGPNITANGSDIAVDNQAELEESWLDLSLLLLK---GFIFSSIILAAVLGNALV 160
            |||..|.:.:||.|...               |||.|.:||.|:   ..:.:.:.||..|.||.|
Zfish     6 SSDEFFLINATVSPTTL---------------ESWDDATLLSLQISISAMLAIVTLATALSNAFV 55

  Fly   161 IISVQRNRKLRVITNYFVVSLAMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDVYFST 225
            |.::...|||....|:.:.|||..|:||::..|..:....:| ..|..|..:|:::.|.|:.|.|
Zfish    56 IATIFLTRKLHTPANFLIGSLAATDLLVSILVMPISIVYTVS-KTWTLGQIVCDIWLSSDITFCT 119

  Fly   226 ASILHLCCISVDRYYAIVRPLEYPLNMTHKTVCFMLANVWILPALISFTPIFLGWYTTEEHLREI 290
            |||||||.|::|||:||...|||....|.:....|:..||::...||..|:|.......|.|.|.
Zfish   120 ASILHLCVIALDRYWAITDALEYSKRRTMRRAALMIVIVWVISVSISLPPLFWRQAKAHEELTEC 184

  Fly   291 SLHPDQCSFVVNKAYALISSSVSFWIPGIVMLVMYWRIFKEAIRQRKALSRTSSNILLNSVHMGH 355
            .::.||.|      |.|.|:..:|::|.::::::|.||: .|.|.|...:..:|.....:..:..
Zfish   185 MVNTDQIS------YTLYSTFGAFYVPTVLLMILYGRIY-VAARSRIFKTPATSGKRFTAAQLIQ 242

  Fly   356 TQQPTSLSYLHPSDCDLNATSARE 379
            ....:||       |.||:||.:|
Zfish   243 NSAGSSL-------CSLNSTSNQE 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta3RNP_001034048.2 7tmA_DmOct-betaAR-like 142..>338 CDD:320194 67/198 (34%)
TM helix 1 142..167 CDD:320194 7/27 (26%)
TM helix 2 174..200 CDD:320194 8/25 (32%)
TM helix 3 213..243 CDD:320194 17/29 (59%)
TM helix 4 255..278 CDD:320194 6/22 (27%)
TM helix 5 302..331 CDD:320194 8/28 (29%)
7tm_GPCRs <1161..1234 CDD:475119
TM helix 6 1167..1189 CDD:410628
TM helix 7 1202..1227 CDD:410628
htr1dNP_001139158.1 7tmA_5-HT1B_1D 31..376 CDD:320455 78/244 (32%)
TM helix 1 36..62 CDD:320455 7/25 (28%)
TM helix 2 69..95 CDD:320455 8/25 (32%)
TM helix 3 107..137 CDD:320455 17/29 (59%)
TM helix 4 149..172 CDD:320455 6/22 (27%)
TM helix 5 190..219 CDD:320455 10/35 (29%)
TM helix 6 304..334 CDD:320455
TM helix 7 344..369 CDD:320455
Blue background indicates that the domain is not in the aligned region.

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