DRSC/TRiP Functional Genomics Resources

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Protein Alignment Octbeta3R and Htr1d

DIOPT Version :10

Sequence 1:NP_001034048.2 Gene:Octbeta3R / 3885573 FlyBaseID:FBgn0250910 Length:1256 Species:Drosophila melanogaster
Sequence 2:NP_036984.1 Gene:Htr1d / 25323 RGDID:2847 Length:374 Species:Rattus norvegicus


Alignment Length:351 Identity:96/351 - (27%)
Similarity:155/351 - (44%) Gaps:78/351 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 PNITANGSDIAVDNQA-ELEESW-------LDLSLLLLKGFIFSSIILAAVLGNALVIISVQRNR 168
            ||.:..|......|:: ....:|       |.:||::    :.|.|.||.||.||.|:.::...:
  Rat     4 PNQSLEGLPQEASNRSLNATGAWDPEVLQALRISLVV----VLSIITLATVLSNAFVLTTILLTK 64

  Fly   169 KLRVITNYFVVSLAMADMLVALCAMTFNASVELSGGKWMFGPFMCNVYNSLDVYFSTASILHLCC 233
            ||....||.:.|||..|:||::..|..:.:...: ..|.||..:|:::.|.|:...||||||||.
  Rat    65 KLHTPANYLIGSLATTDLLVSILVMPISIAYTTT-RTWNFGQILCDIWVSSDITCCTASILHLCV 128

  Fly   234 ISVDRYYAIVRPLEYPLNMTHKTVCFMLANVWILPALISFTPIFLGWYTTEEHLREISLHPDQCS 298
            |::|||:||...|||....|......|:|.||.:...||..|:|  |       |:.:.|.:...
  Rat   129 IALDRYWAITDALEYSKRRTAGHAAAMIAAVWAISICISIPPLF--W-------RQATAHEEMSD 184

  Fly   299 FVVNK---AYALISSSVSFWIPGIVMLVMYWRIFKEAIRQRKALSRTSSNILLNSVHMGHTQQPT 360
            .:||.   :|.:.|:..:|:||.|:::::|.||: .|.|.|          :||         |.
  Rat   185 CLVNTSQISYTIYSTCGAFYIPSILLIILYGRIY-VAARSR----------ILN---------PP 229

  Fly   361 SL------------SYLHPSDCDLNATSAREETHSALSNLEDMLQPATDEDDDRDECDELRVPSP 413
            ||            .....|.|.||.:.....||:..|.|               ..:::::   
  Rat   230 SLYGKRFTTAQLITGSAGSSLCSLNPSLHESHTHTVGSPL---------------FFNQVKI--- 276

  Fly   414 PPRRLSRSSIDLRDLEQERYEKVTHT 439
               :|:.|.::.:.:...|..|.|.|
  Rat   277 ---KLADSILERKRISAARERKATKT 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Octbeta3RNP_001034048.2 7tmA_DmOct-betaAR-like 142..>338 CDD:320194 69/198 (35%)
TM helix 1 142..167 CDD:320194 9/24 (38%)
TM helix 2 174..200 CDD:320194 9/25 (36%)
TM helix 3 213..243 CDD:320194 16/29 (55%)
TM helix 4 255..278 CDD:320194 7/22 (32%)
TM helix 5 302..331 CDD:320194 10/31 (32%)
7tm_GPCRs <1161..1234 CDD:475119
TM helix 6 1167..1189 CDD:410628
TM helix 7 1202..1227 CDD:410628
Htr1dNP_036984.1 7tmA_5-HT1B_1D 32..364 CDD:320455 91/323 (28%)
TM helix 1 37..63 CDD:320455 11/29 (38%)
TM helix 2 70..96 CDD:320455 9/25 (36%)
TM helix 3 108..138 CDD:320455 16/29 (55%)
DRY motif, important for ligand-induced conformation changes. /evidence=ECO:0000250|UniProtKB:P41595 132..134 1/1 (100%)
TM helix 4 150..173 CDD:320455 8/24 (33%)
TM helix 5 191..220 CDD:320455 9/29 (31%)
TM helix 6 291..321 CDD:320455 4/9 (44%)
TM helix 7 332..357 CDD:320455
NPxxY motif, important for ligand-induced conformation changes and signaling. /evidence=ECO:0000250|UniProtKB:P41595 349..353
Blue background indicates that the domain is not in the aligned region.

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