DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment frac and Ltbp3

DIOPT Version :9

Sequence 1:NP_001137905.1 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:XP_038948570.1 Gene:Ltbp3 / 83838 RGDID:62057 Length:1317 Species:Rattus norvegicus


Alignment Length:988 Identity:262/988 - (26%)
Similarity:359/988 - (36%) Gaps:327/988 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   174 DSKPEPQIVIEINDDHANEVVES---EPALAETETENEV-----LENETPLKAEVQTDVLNSSNA 230
            |..|:||           ::.||   .|||.:||.|..|     :..|..::....|...:.:..
  Rat   482 DGPPKPQ-----------QLPESPSRAPALEDTEEERGVTLDPPVSEERSVQQSHPTTTTSPARP 535

  Fly   231 SVKVTNDPYEPTF----------------------------LDNN-CGEDNGGCAHICKRLLYPD 266
            ..::.:.|..|||                            |:.| ||  :|.|.        |.
  Rat   536 YPELISRPSPPTFHRFLPDLPPSRSAVEIAPTQVTETDECRLNQNICG--HGQCV--------PG 590

  Fly   267 ENQPINKCDCREGYTLDPNDYASCLDIDEC-LESNGGCSEICENLPGEYKCSCQEGY--YLDESG 328
            .:.  ..|.|..||...| .:..|:|::|| .|..|....||.|..|.|.|.|..||  ::...|
  Rat   591 PSD--YSCHCNPGYRSHP-QHRYCVDVNECEAEPCGPGRGICMNTGGSYNCHCNRGYRLHVGAGG 652

  Fly   329 KSCVDINECANPELSSNCQGACENLPGSYRCVEPLEENPEITEVVENPIEKTNEVPVNVSESQPA 393
            :||||:||||.|.|..: .|.|.|.||.|:|                                  
  Rat   653 RSCVDLNECAKPHLCGD-GGFCINFPGHYKC---------------------------------- 682

  Fly   394 GKTCNSGFQLSADGTD-CQDINECEVDGPEDLDNNAVCQQKCENTIGSFRC-TCVEGYHLLEDQR 456
              .|..|::|...... |:||:||.       |.:.....||||..|||:| .|..||      |
  Rat   683 --NCYPGYRLKTSRPPVCEDIDECR-------DPSTCPDGKCENKPGSFKCIACQPGY------R 732

  Fly   457 SCALDSCTDLENPQLNRTRCAHE-CQDLPEGSYRCVCPKGYELSEDQHSCLVQESPCSTEKGVEK 520
            |....:|.|: |.....:.|:.. |::|| |||||.|.:|||.:.|                   
  Rat   733 SQGGGACRDI-NECSEGSPCSPGWCENLP-GSYRCTCAQGYEPALD------------------- 776

  Fly   521 CSPGTCLASEDNTSFSCICPTGYRSEAFSCQDIDECAEDTHLC-SHTCQNTPGGYQCQCPEGLNL 584
                                      ..||.|:||| |..::| ...|.||||.:|||       
  Rat   777 --------------------------GLSCIDMDEC-ETGNICHDGICTNTPGSFQCQ------- 807

  Fly   585 VEEYTCLAENLCEVNNNGCEQICLTARGGVCACREGFRLSADGKSCEDVDECLVNNGGCQQVCRN 649
                                            |..|:.||.|...|||:|||..........|.|
  Rat   808 --------------------------------CLSGYHLSRDRSHCEDIDECDFPAACIGGDCIN 840

  Fly   650 LPGSYGCICAAGYELLKLDGIRGYCFDIDECSQRTHGCSDQMLCENLNGSYTCLCPPGYALGLDN 714
            ..|||.|:|..|:.|:   |.| .|.|||||||....|.....||||.|||.|:|..|:.|..|.
  Rat   841 TNGSYRCLCPQGHRLV---GGR-KCQDIDECSQDPGLCLPHGACENLQGSYVCVCDEGFTLTQDQ 901

  Fly   715 H-------------IVTSLNSSFITDSTSSETPSAHTCLDIDECSLANGNCSHFCQNEP------ 760
            |             ...:.:.:...||..:...:...|.    |||..|...| |:..|      
  Rat   902 HGCEEVEQPHHKKECYLNFDDTVFCDSVLATNVTQQECC----CSLGAGWGDH-CEIYPCPVYSS 961

  Fly   761 GGFQCACPLGYALSED-------MRTCQDIDECLDSNGQ-CSQ-LCLNQPGGFACACETGFELTP 816
            ..|...||.|...::|       :...:|||||:....: |.: .|:|...|:.|.|:.||....
  Rat   962 AEFHSLCPDGKGYTQDNNIVNYGIPAHRDIDECILFGAEICKEGKCVNTQPGYECYCKQGFYYDG 1026

  Fly   817 DGFGCADIDECSQDYGNC-SDICINLLGTHACACERGYELAKDKLSCL---DVDECAGLLSGGCS 877
            :...|.|:||| .|..|| :.:|.|..|.:.|||....|.:..:..||   ::.|..|:.:|..:
  Rat  1027 NLLECVDVDEC-LDESNCRNGVCENTRGGYRCACTPPAEYSPAQRQCLSPEEMGEARGISAGSRA 1090

  Fly   878 HE-----------------CINKAGTFECGCPLGYILNDDGRSC----SPALVG------CPPGT 915
            .|                 |:|..|::.|.|...::....||.|    |.|..|      |  ..
  Rat  1091 QEEMDMDECQDPAACRPGRCVNLPGSYRCECHPPWVPGSSGRDCQLPESQAEHGPERREVC--WG 1153

  Fly   916 QRSADG-C-API--------------------ECNPGYTLGSDDKC------------------- 939
            ||..|| | .|:                    :|.|....|:..:|                   
  Rat  1154 QRGEDGMCMGPLAGPALTFDDCCCRQGRGWGTQCRPCPPRGTGSQCPTSQSESNSFWDTSPLLLG 1218

  Fly   940 ----VDIDECQKQNGGC---SHRCSNTEGSFKCSCPPGYELDSDQKTCQDIDEC---DQDKTSCI 994
                ||.|..::.:..|   |.||....|...|.||.|::||:.:..|.|||||   :|....|.
  Rat  1219 KSPRVDEDSSEEDSDECRCVSGRCVPRPGGAVCECPGGFQLDASRARCVDIDECRELNQRGLLCK 1283

  Fly   995 TGTCINEIGGFRC 1007
            :..|:|..|.|||
  Rat  1284 SERCVNTSGSFRC 1296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_001137905.1 FXa_inhibition 296..331 CDD:291342 13/37 (35%)
cEGF 396..415 CDD:289433 6/19 (32%)
FXa_inhibition 425..458 CDD:291342 13/33 (39%)
FXa_inhibition 476..505 CDD:291342 14/29 (48%)
vWFA <550..586 CDD:294047 15/36 (42%)
FXa_inhibition 596..630 CDD:291342 5/33 (15%)
FXa_inhibition 636..>664 CDD:291342 9/27 (33%)
EGF_CA 676..715 CDD:284955 20/38 (53%)
FXa_inhibition 745..780 CDD:291342 12/47 (26%)
FXa_inhibition 786..821 CDD:291342 9/36 (25%)
FXa_inhibition 827..862 CDD:291342 11/35 (31%)
FXa_inhibition 874..904 CDD:291342 9/46 (20%)
FXa_inhibition 945..980 CDD:291342 11/37 (30%)
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
DUF5011 1468..1536 CDD:295940
Ltbp3XP_038948570.1 EGF_CA 352..387 CDD:214542
TB 412..453 CDD:395554
PHA03247 <484..574 CDD:223021 18/100 (18%)
EGF_CA 613..656 CDD:214542 16/42 (38%)
EGF_CA 657..692 CDD:238011 17/71 (24%)
EGF_CA 700..733 CDD:214542 16/45 (36%)
EGF_CA 741..781 CDD:214542 17/86 (20%)
EGF_CA 782..822 CDD:214542 19/79 (24%)
EGF_CA 823..862 CDD:214542 15/42 (36%)
EGF_CA 863..896 CDD:214542 18/32 (56%)
TB 926..969 CDD:395554 11/47 (23%)
EGF_CA 1033..>1061 CDD:214542 13/28 (46%)
EGF_CA 1095..1135 CDD:214542 7/39 (18%)
TB 1161..>1195 CDD:395554 4/33 (12%)
EGF_CA 1268..1306 CDD:214542 13/29 (45%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm44463
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24034
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

Return to query results.
Submit another query.