DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment frac and ltbp1

DIOPT Version :9

Sequence 1:NP_001137905.1 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:XP_017207300.1 Gene:ltbp1 / 562072 ZFINID:ZDB-GENE-091202-8 Length:1527 Species:Danio rerio


Alignment Length:926 Identity:263/926 - (28%)
Similarity:350/926 - (37%) Gaps:243/926 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 PLKAEVQTDVLNSSNASVK--VTNDPYEPTFLDNNCGEDNGGCAHICKRLLYPDENQPINKCD-- 275
            |.....|||....:|.:::  |..||..|                      :|...||:....  
Zfish   684 PPNGHTQTDSQGYNNPTIRHQVPMDPPVP----------------------FPTLQQPVEALSIT 726

  Fly   276 ---------------------CREGYTLDPNDYASCLDIDECLESNGGC-SEICENLPGEYKCSC 318
                                 ..||..:.|...|   :||||:.....| :.||.|....|.|.|
Zfish   727 ERQLPEVVEKVSPPAPVAIPPSNEGQDITPTQLA---EIDECVVRPDICGAGICYNTAESYTCFC 788

  Fly   319 QEGYYLDESGKSCVDINECA-NPELSSNCQGACENLPGSYRCVEPLEENPEITEVVENPIEKTNE 382
            .:||..|..|.:|||::||| ||.|.:|  |.|:|.||.:.||                      
Zfish   789 DDGYRTDSEGTTCVDVDECAENPSLCAN--GRCQNTPGGFLCV---------------------- 829

  Fly   383 VPVNVSESQPAGKTCNSGFQLSADGTDCQDINECEVDGPEDLDNNAVCQQ-KCENTIGSFRCT-C 445
                          |..||..:..|:.|.||:||:        |...|.. .|.||:|||.|: |
Zfish   830 --------------CELGFMPNERGSSCSDIDECQ--------NRRACPSGLCYNTLGSFMCSPC 872

  Fly   446 VEGYHLLEDQRSCALDSCTDLENPQLNRTRCAH-ECQDLPEGSYRCVCPKGYELSEDQHSCL-VQ 508
            .:|:.....|       |.|: |..|::..||| :|.:| ||.:.|.|.:|:..:.|..||. :.
Zfish   873 PDGFEGKNGQ-------CVDI-NECLDKRVCAHGQCSNL-EGYFVCTCDEGFLPTPDGKSCTDID 928

  Fly   509 ESPCSTEKGVEKCSPGTCLASEDNT--SFSCICPTGYR--SEAFSCQDIDECAEDTHLCSHT--C 567
            |  |..:   ..|..|.|    .||  ||.|.|..|::  |....|:|:|||......|...  |
Zfish   929 E--CQDD---NVCIQGHC----QNTQGSFICNCEPGFKLSSSGDQCEDVDECLVIPQTCDGVGQC 984

  Fly   568 QNTPGGYQCQCPEGLNLVEEYTCLAENLCEVNNNGC--EQICLTARGG-VCACREGFRLSADGKS 629
            .|..|.|||.||:|...|...:||..:.||.:...|  ...||...|. :|.|..||..:..|  
Zfish   985 VNILGSYQCNCPQGYRQVNSTSCLDVDECEDDTQLCIPNGECLNTEGSFLCVCDAGFVSTRTG-- 1047

  Fly   630 CEDVDECLVNNGGC--QQVCRNLPGSYGCICAAGYELLKLDGIRGY-CFDIDECSQRTHGCSDQM 691
            |:|||||.:|...|  ...|:|..||:.|.|..|::    |...|. |.|::||....:.|. :.
Zfish  1048 CQDVDECSLNENTCGSHGTCQNTIGSFICQCDPGFK----DSQDGQGCVDVNECELLGNVCG-EA 1107

  Fly   692 LCENLNGSYTCLCP-------PGYALGLDNHIVT---------SLNSSFITDSTSSETPSAHTCL 740
            .|||..|::.||||       |.....:....||         :||...:.|...:.:.:...|.
Zfish  1108 TCENREGTFLCLCPDDLQEFDPMLGKCISTPPVTTVERKECYFNLNDENLCDKVLASSMTKEECC 1172

  Fly   741 DIDECSLANG---NCS-HFCQNEPG--GFQCACPL--GYALSED---------MRTCQDIDEC-L 787
                |:|..|   ||. |.|. .||  .|...||.  ||.:|.|         ..|..|.||| |
Zfish  1173 ----CTLGAGWGDNCEVHPCP-IPGTDQFSQMCPAGRGYLISGDPMSTTSSLAENTKADADECQL 1232

  Fly   788 DSNGQCSQ-LCLNQPGGFACACETGFELTPDGFGCADIDECSQDYGNCSD-ICINLLGTHACACE 850
            ..:..|.. .|||..|.:.|.|::|.........|.|.||| ||...|.| .|:|..|::.|.|.
Zfish  1233 FGSEICKDGFCLNTAGWYECYCKSGLYYDESKLQCLDTDEC-QDEAKCRDGECMNTYGSYQCFCT 1296

  Fly   851 RGYELAKDKLSCLDVDEC----AGLLSGGC------SHECINKAGTF-----ECGCPLGYILNDD 900
            ....||.|...|:..|..    |.|.||.|      :..|.|.....     ||.|..|....:|
Zfish  1297 PPMVLAMDNTHCILPDVAGQSEADLYSGVCWERVTENFSCANPIPNIHTSFTECCCLYGEAWGND 1361

  Fly   901 GRSCSPALVGCPPG--TQRSADGC-------------APIECNPGYT---LGSDDKCVDI----- 942
            ...|        ||  |...|..|             .||..:|.|.   |..|.....|     
Zfish  1362 CALC--------PGKNTDSYAQMCNIRRPYGRDALVAGPIGVSPDYNPQPLNPDGTLPYIEDYDE 1418

  Fly   943 -------------DECQKQNGGCSHRCSNTEGSFKCSCPPGYELDSDQKTCQDIDECDQ---DKT 991
                         :||...||..:.||...:..:.|.|..||.||..:..|.||:||.:   ..:
Zfish  1419 PRNPYDAFEGLRAEECGVLNGCENGRCVRVQEGYTCDCFDGYTLDMSRMACVDINECSELNAKMS 1483

  Fly   992 SCITGTCINEIGGFRC 1007
            .|..|.|||..|.::|
Zfish  1484 LCKNGNCINTQGSYKC 1499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_001137905.1 FXa_inhibition 296..331 CDD:291342 12/35 (34%)
cEGF 396..415 CDD:289433 7/18 (39%)
FXa_inhibition 425..458 CDD:291342 12/34 (35%)
FXa_inhibition 476..505 CDD:291342 11/29 (38%)
vWFA <550..586 CDD:294047 15/37 (41%)
FXa_inhibition 596..630 CDD:291342 11/36 (31%)
FXa_inhibition 636..>664 CDD:291342 10/29 (34%)
EGF_CA 676..715 CDD:284955 13/45 (29%)
FXa_inhibition 745..780 CDD:291342 16/51 (31%)
FXa_inhibition 786..821 CDD:291342 10/36 (28%)
FXa_inhibition 827..862 CDD:291342 13/35 (37%)
FXa_inhibition 874..904 CDD:291342 9/40 (23%)
FXa_inhibition 945..980 CDD:291342 11/34 (32%)
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
DUF5011 1468..1536 CDD:295940
ltbp1XP_017207300.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D4721at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24034
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
44.020

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