DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment frac and Scube2

DIOPT Version :10

Sequence 1:NP_648137.3 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:NP_001414533.1 Gene:Scube2 / 499241 RGDID:1563998 Length:972 Species:Rattus norvegicus


Alignment Length:967 Identity:240/967 - (24%)
Similarity:333/967 - (34%) Gaps:353/967 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 EGYTLDPNDYASCLDIDECLESNGGC--SEICENLPGEYKCSCQEGYYLDESGKSCVDINECANP 340
            :|.|..|.:     |:|||.:....|  ..:|:|.|..|||||:.||  ...|:.|.|::||.| 
  Rat    38 QGRTNGPPE-----DVDECAQGLDDCHADALCQNTPTSYKCSCKPGY--QGEGRQCEDMDECDN- 94

  Fly   341 ELSSNCQGACENLPGSYRCVEPLEENPEITEVVENPIEKTNEVPVNVSESQPAGKTCNSGFQLSA 405
            .|:..|...|.|:||:|||                                    ||..||.|:.
  Rat    95 ALNGGCVHDCLNIPGNYRC------------------------------------TCFDGFMLAH 123

  Fly   406 DGTDCQDINECEVDGPEDLDNNAVCQQKCENTIGSFRCTCVEGYHLLEDQRSCALD-----SCTD 465
            ||.:|.|::||       |:||..||..|.|.:||:.|.|.||:.|.::|.:|...     ||.:
  Rat   124 DGHNCLDVDEC-------LENNGGCQHTCTNVMGSYECRCKEGFFLSDNQHTCIHRSEEGLSCMN 181

  Fly   466 LENPQLNRTRCAHECQDLPEGSYRCVCPKGYELSEDQHSCLVQESPCSTEKGVEKCSPGTCLASE 530
            .::      .|||.|::.|.||..|.|..|:||:::|..|::                       
  Rat   182 KDH------GCAHICKEAPRGSIACECRPGFELAKNQRDCIL----------------------- 217

  Fly   531 DNTSFSCICPTGYRSEAFSCQDIDECAEDTHLCSHTCQNTPGGYQCQC-------PEGLNLVEEY 588
                                    .|......|.|:|::|..|.:|.|       .:|.:.:|:.
  Rat   218 ------------------------TCNHGNGGCQHSCEDTAEGPECSCHPHYRLHADGRSCLEQE 258

  Fly   589 TCLAE----------------------NLCEVNNNGCEQICLTARGGV-CACREGFRLSADGKSC 630
            ..:.|                      ..|.|||.||::.|.....|| |:|..||.|..|||:|
  Rat   259 GTMLEGTESNATSVADGDKRVKRRLLMETCAVNNGGCDRTCKDTSTGVHCSCPSGFTLQLDGKTC 323

  Fly   631 EDVDECLVNNGGCQQVCRNLPGSYGCICAAGYELLKLDGIRGYCFDIDECS-QRTHGCSDQMLCE 694
            :|:|||...||||...|:|..||:.|.|..|::||..:   ..|.|:|||| :||  |...  |.
  Rat   324 KDIDECQTRNGGCNHFCKNTVGSFDCSCRKGFKLLTDE---KSCQDVDECSLERT--CDHS--CI 381

  Fly   695 NLNGSYTCLCPPGYALGLDNHIVTSLNSSFITDSTSSETPSAHTCLDIDECSLANGNCSHFCQNE 759
            |..|::||.|..||.|....|                       |.|.:|||:.||.|...|.|.
  Rat   382 NHPGTFTCACNRGYTLYSFTH-----------------------CGDTNECSVNNGGCQQVCVNT 423

  Fly   760 PGGFQCACPLGYALSEDMRTCQDIDECL--DSNGQCSQLCLNQPGGFAC--ACETGFELT----- 815
            .||::|.|..||.|..:.:.|.::...|  .:..:.|..|....||..|  .|.:|..|:     
  Rat   424 VGGYECQCHPGYKLHWNKKDCVEVKGVLPTSTTPRVSLHCGKSGGGDRCFLRCHSGIHLSSGLQE 488

  Fly   816 -------------------PDGFGCADIDECSQDY----GNCS--DICINLLGTHACACERGYEL 855
                               ...||.......|..:    |.||  ...::..|......||...:
  Rat   489 AYSVTCGSPSLRSRQQKSNDSAFGDVVTVRTSVTFKLNEGKCSLQKAKLSPEGLRPALPERHSSV 553

  Fly   856 AKD----KLSCLDVDECAGLL------------------------SGGCSHECINK--------- 883
            .:.    .|:|....:..|.|                        :..|:..|:.|         
  Rat   554 KESFHYANLTCSPGKQVLGALGRPNAPKEMFITVEFERETYQKEVTASCNLSCVVKRTEKRLRKA 618

  Fly   884 -------------------------------AGTFECGCPLGYILNDDGRSCSPALVGCPPGTQR 917
                                           :|..|..|.:|     .||..|...: |.|| :.
  Rat   619 VRTLKKAAHREQFHLQLSGTDLDVAKKFPRVSGQQEETCGVG-----QGREESQCGL-CQPG-EY 676

  Fly   918 SADGCAPIECNPGYTLGSDDKCVDIDECQKQNGG-------------------CS---------H 954
            ||||.||  |.| ..||:....|....|....||                   ||         |
  Rat   677 SADGFAP--CQP-CALGTFQPDVGRTSCLPCGGGLPTKHLGATSFHDCETRVQCSPGHFYNTTTH 738

  Fly   955 RCSNTE--------GSFKC-SCPPGYELDSDQKTCQDIDECDQDKTSCITGTCINEIGGFR--CE 1008
            ||....        |...| |||.....|.|..|  :|.:|...|       |..|:|.|.  .|
  Rat   739 RCIRCPLGTYQPEFGKNNCVSCPGNTTTDFDGST--NITQCKNRK-------CGGELGDFTGYIE 794

  Fly  1009 FPKFPVLPEIPTASSLPESPKIELKTPKYPDFTELSNEIPENPKKPAEFDYPEPKFP 1065
            .|.:|                     ..||..:|.:..|...||:......||...|
  Rat   795 SPNYP---------------------GNYPANSECTWTINPPPKRRILIVVPEIFLP 830

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_648137.3 FXa_inhibition 296..331 CDD:464251 13/36 (36%)
cEGF 396..415 CDD:463661 9/18 (50%)
FXa_inhibition 425..458 CDD:464251 14/32 (44%)
FXa_inhibition 476..505 CDD:464251 13/28 (46%)
EGF_CA 552..>581 CDD:214542 8/35 (23%)
FXa_inhibition 596..630 CDD:464251 17/34 (50%)
FXa_inhibition 636..>664 CDD:464251 12/27 (44%)
EGF_CA 676..711 CDD:214542 16/35 (46%)
FXa_inhibition 745..780 CDD:464251 14/34 (41%)
FXa_inhibition 786..821 CDD:464251 10/62 (16%)
vWFA <821..861 CDD:469594 7/49 (14%)
FXa_inhibition 874..904 CDD:464251 9/69 (13%)
FXa_inhibition 945..980 CDD:464251 15/71 (21%)
PTZ00449 <1017..>1098 CDD:185628 9/49 (18%)
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
HYR 1468..1536 CDD:460572
Scube2NP_001414533.1 None
Blue background indicates that the domain is not in the aligned region.

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