DRSC/TRiP Functional Genomics Resources

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Protein Alignment frac and Efemp1

DIOPT Version :10

Sequence 1:NP_648137.3 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:NP_001012039.1 Gene:Efemp1 / 305604 RGDID:1308528 Length:493 Species:Rattus norvegicus


Alignment Length:403 Identity:127/403 - (31%)
Similarity:164/403 - (40%) Gaps:86/403 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   539 CPTGYRSEAF--SCQDIDECAEDTHLC--SHTCQNTPGGYQCQCPEGLNLVEEYTCLAENLCEVN 599
            |..||..:..  .|:|||||......|  ...|.|..|||.| .|:...::            ||
  Rat    29 CTDGYEWDPVRQQCKDIDECDIVPDACKGGMKCVNHYGGYLC-LPKTAQII------------VN 80

  Fly   600 NNGCEQICLTARG------GVCACRE----------GFRLSADGKSCEDVDECLVNNGGCQQVCR 648
            |...:|....|..      |..|.|.          ||..||...:..:     |..|....|.|
  Rat    81 NEQPQQETPAAEASSGAATGTIAARSMATSGVIPGGGFIASATAVAGPE-----VQTGRNNFVIR 140

  Fly   649 NLPG---------SYGCICAAGYELLKLDGIRGYCFDIDECSQRTHGCSDQMLCENLNGSYTCLC 704
            ..|.         |:...||||||    ......|.|||||:..||.|....:|.||.||:||.|
  Rat   141 RNPADPQRIPSNPSHRIQCAAGYE----QSEHNVCQDIDECTSGTHNCRLDQVCINLRGSFTCHC 201

  Fly   705 PPGYALGLDNHIVTSLNSSFITDSTSSETPSAHTCLDIDECSLANGNCSHFCQNEPGGFQCACPL 769
            .|||                        ......|:||||||:. ..|...|.|.||.|.|.|..
  Rat   202 LPGY------------------------QKRGEQCVDIDECSVP-PYCHQGCVNTPGSFYCQCNP 241

  Fly   770 GYALSEDMRTCQDIDECLDSNGQCSQLCLNQPGGFACACETGFELTPDGFGCADIDECSQDYGNC 834
            |:.|:.:..||.||:|| |::.||:|.|.|..|.|.|.|..|:||:.|...|.|||||......|
  Rat   242 GFQLAANNYTCVDINEC-DASNQCAQQCYNILGSFICQCNQGYELSSDRLNCEDIDECRTSSYLC 305

  Fly   835 SDICINLLGTHACACERGYELAKDKLSCLDVDECAGLLSGGCSHE--CINKAGTFEC----GCPL 893
            ...|:|..|..:|.|.:||::.:.: :|.|::||.  .:..|..:  |.|..|.|.|    .|..
  Rat   306 QYQCVNEPGKFSCMCPQGYQVVRSR-TCQDINECE--TTNECREDEMCWNYHGGFRCYPQNPCQD 367

  Fly   894 GYILNDDGRSCSP 906
            .|:|..:.|...|
  Rat   368 PYVLTSENRCVCP 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_648137.3 FXa_inhibition 296..331 CDD:464251
cEGF 396..415 CDD:463661
FXa_inhibition 425..458 CDD:464251
FXa_inhibition 476..505 CDD:464251
EGF_CA 552..>581 CDD:214542 13/30 (43%)
FXa_inhibition 596..630 CDD:464251 12/49 (24%)
FXa_inhibition 636..>664 CDD:464251 11/36 (31%)
EGF_CA 676..711 CDD:214542 19/34 (56%)
FXa_inhibition 745..780 CDD:464251 12/34 (35%)
FXa_inhibition 786..821 CDD:464251 15/34 (44%)
vWFA <821..861 CDD:469594 14/39 (36%)
FXa_inhibition 874..904 CDD:464251 10/35 (29%)
FXa_inhibition 945..980 CDD:464251
PTZ00449 <1017..>1098 CDD:185628
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
HYR 1468..1536 CDD:460572
Efemp1NP_001012039.1 EGF_CA 44..71 CDD:473889 12/27 (44%)
EGF_CA 173..204 CDD:429571 16/30 (53%)
EGF_CA 214..244 CDD:214542 15/30 (50%)
EGF_CA 254..293 CDD:214542 18/39 (46%)
Mediates interaction with TIMP3. /evidence=ECO:0000250 259..493 43/125 (34%)
EGF_CA 294..333 CDD:214542 13/39 (33%)
EGF_CA 334..378 CDD:214542 13/45 (29%)
Blue background indicates that the domain is not in the aligned region.

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