DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment frac and Scube3

DIOPT Version :10

Sequence 1:NP_648137.3 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:XP_008771027.1 Gene:Scube3 / 294297 RGDID:1304880 Length:1015 Species:Rattus norvegicus


Alignment Length:1081 Identity:257/1081 - (23%)
Similarity:352/1081 - (32%) Gaps:438/1081 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   281 TLDPNDYASCL-----DIDECLESNGGC--SEICENLPGEYKCSCQEGYYLDESGKSCVDINECA 338
            |.|.:....||     |:|||:|....|  ..||:|.|..|||.|:.||..|  ||.|.|::||.
  Rat    18 TRDTSSVLMCLPLPGPDVDECVEGTDHCHIDAICQNTPRSYKCICKSGYTGD--GKHCKDVDECE 80

  Fly   339 NPELSSNCQGACENLPGSYRCVEPLEENPEITEVVENPIEKTNEVPVNVSESQPAGKTCNSGFQL 403
            . |.::.|...|.|:||:|||                                    ||..||.|
  Rat    81 R-EDNAGCVHDCVNIPGNYRC------------------------------------TCYDGFHL 108

  Fly   404 SADGTDCQDINECEVDGPEDLDNNAVCQQKCENTIGSFRCTCVEGYHLLEDQRSCALDSCTDLEN 468
            :.||.:|.|::||       .:.|..|||.|.|.:||:.|.|.:|:.|.::|.:|       ::.
  Rat   109 AHDGHNCLDVDEC-------AEGNGGCQQSCVNMMGSYECHCRDGFFLSDNQHTC-------IQR 159

  Fly   469 PQ-----LNRTR-CAHECQDLPEGSYRCVCPKGYELSEDQHSCLVQESPCSTEKGVEKCSPGTCL 527
            |:     :|:.. |||.|::.|:|...|.|..|:||:::|..|.:                 || 
  Rat   160 PEEGMNCMNKNHGCAHICRETPKGGIACECRPGFELTKNQRDCKL-----------------TC- 206

  Fly   528 ASEDNTSFSCICPTGYRSEAFSCQDIDECAEDTHLCSHTCQNTPGGYQCQCPEGLNL-VEEYTCL 591
                          .|.:..               |.|||.:|..|.:|.|.....| .:..||:
  Rat   207 --------------NYGNGG---------------CQHTCDDTEQGPRCGCHVKFVLHTDGKTCI 242

  Fly   592 AE--------------NLCEVNNNGCEQICLTARGGV-CACREGFRLSADGKSCEDVDECLVNNG 641
            .|              ..|.|||.||:..|..|..|| |:|..||.|..|.|:|:|:|||.::||
  Rat   243 GERRLEQHGPTQAVSNETCAVNNGGCDSKCHDAATGVHCSCPVGFMLQPDRKTCKDIDECRLHNG 307

  Fly   642 GCQQVCRNLPGSYGCICAAGYELLKLDGIRGYCFDIDECS-QRTHGCSDQMLCENLNGSYTCLCP 705
            ||..:|||..||:.|.|..||:||..:   ..|.|||||| .||  | |.| |.|..||:.|||.
  Rat   308 GCDHICRNTVGSFECSCKKGYKLLINE---RSCQDIDECSFDRT--C-DHM-CVNTPGSFQCLCH 365

  Fly   706 PGYALGLDNHIVTSLNSSFITDSTSSETPSAHTCLDIDECSLANGNCSHFCQNEPGGFQCACPLG 770
            .||.|...:|                       |.|:||||:..|.|...|.|.||.:||.||.|
  Rat   366 RGYLLYGISH-----------------------CGDVDECSINKGGCRFGCINTPGSYQCTCPAG 407

  Fly   771 YA-LSEDMRTCQDIDECLDSNG---------------QCSQLCLNQ-------PGGFACACET-- 810
            .. |..:.:.|.:..:|..|:|               .|:..|.::       ..||..:|.|  
  Rat   408 QGRLHWNGKDCTEPVKCQSSSGASKAMLSCSRSGKKDTCALTCPSRARFLPESENGFTVSCGTPS 472

  Fly   811 --------------------------------GFELT-----------------------PDGFG 820
                                            .|::.                       |.|..
  Rat   473 PKAAAGRAIHPGNSTISNSCHEAAVLPVKQRASFKIKDAKCRLHLRNKGKAEEASGRTPGPGGAS 537

  Fly   821 CADIDECSQDYGNCSDICINLLGTHACACER-----------GYELAKDKLSCLDVDECAGLLSG 874
            |:|          |....|:|    .|...|           |.|:.:..|. |:.:..|...:.
  Rat   538 CSD----------CQVTFIHL----KCDSSRKGKGRRARTPPGKEVTRLTLE-LEAEVRAEETTA 587

  Fly   875 GCSHECI---------------------------------------------------------N 882
            ||...|:                                                         :
  Rat   588 GCGLTCLRQRMERRLKGSLKMLRKSINQDRFLLRLAGLDYELAHKPGLAAGDRAELVEVCRPGQH 652

  Fly   883 KAGTFECGCPLGYILNDDGRSCSPALVG----------------------------------CPP 913
            :|||....||.|...:.....|.|...|                                  |||
  Rat   653 RAGTKCVSCPQGTYYHGQTEQCVPCPAGTFQEREGQLSCDLCPGSDAHGPLGATNVTTCAGQCPP 717

  Fly   914 GTQRSADGCAPIE------------------CNPGYTLGSDDKCVDIDECQKQNGGCS------- 953
            | |.|.||..|.:                  |..|.|. ..:..|...:|..: ..||       
  Rat   718 G-QHSGDGFKPCQPCPRGTYQPEAGRTLCFPCGGGLTT-KHEGAVSFQDCDTK-VQCSPGHYYNT 779

  Fly   954 --HRCSN-TEGSFK-------CS-CPPGYELDSDQKTCQDIDECDQDKTSCITGTCINEIGGFR- 1006
              |||.. ..||::       |: ||.....|.|..|         ....|....|..|:|.|. 
  Rat   780 SIHRCIRCAVGSYQPDFRQNFCTRCPGNTSTDFDGST---------SVAQCKNRQCGGELGEFTG 835

  Fly  1007 -CEFPKFPVLPEIPTASSLPESPKIELKTPKYPDFTELSNEIPENPKKPAEFDYPEPKFPS---- 1066
             .|.|.:|                     ..||...|....|...||:......||...||    
  Rat   836 YIESPNYP---------------------GNYPAGVECIWNINPPPKRKILIVVPEIFLPSEDEC 879

  Fly  1067 -----LPKWEGLPKLPPLADIPTSKAPVPLRPEVPKSLWVN 1102
                 :.|......:.......|.:.|:..... .:.||:|
  Rat   880 GDVLVMRKNSSPSSITTYETCQTYERPIAFTAR-SRKLWIN 919

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_648137.3 FXa_inhibition 296..331 CDD:464251 16/36 (44%)
cEGF 396..415 CDD:463661 9/18 (50%)
FXa_inhibition 425..458 CDD:464251 13/32 (41%)
FXa_inhibition 476..505 CDD:464251 12/28 (43%)
EGF_CA 552..>581 CDD:214542 8/28 (29%)
FXa_inhibition 596..630 CDD:464251 17/34 (50%)
FXa_inhibition 636..>664 CDD:464251 14/27 (52%)
EGF_CA 676..711 CDD:214542 20/35 (57%)
FXa_inhibition 745..780 CDD:464251 14/35 (40%)
FXa_inhibition 786..821 CDD:464251 12/113 (11%)
vWFA <821..861 CDD:469594 9/50 (18%)
FXa_inhibition 874..904 CDD:464251 9/86 (10%)
FXa_inhibition 945..980 CDD:464251 13/52 (25%)
PTZ00449 <1017..>1098 CDD:185628 13/89 (15%)
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
HYR 1468..1536 CDD:460572
Scube3XP_008771027.1 EGF_3 38..73 CDD:463759 16/36 (44%)
EGF_CA 75..115 CDD:214542 19/76 (25%)
FXa_inhibition 121..156 CDD:464251 14/41 (34%)
FXa_inhibition 166..202 CDD:464251 13/35 (37%)
FXa_inhibition 206..241 CDD:464251 11/64 (17%)
FXa_inhibition 261..296 CDD:464251 17/34 (50%)
FXa_inhibition 302..337 CDD:464251 16/37 (43%)
EGF_CA 339..>368 CDD:214542 18/32 (56%)
EGF_CA 378..419 CDD:214542 17/40 (43%)
Ephrin_rec_like 664..711 CDD:429604 4/46 (9%)
Ephrin_rec_like 718..765 CDD:429604 10/48 (21%)
Ephrin_rec_like 774..821 CDD:429604 11/55 (20%)
CUB 826..937 CDD:238001 23/116 (20%)
Blue background indicates that the domain is not in the aligned region.

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