DRSC/TRiP Functional Genomics Resources

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Protein Alignment frac and Matn4

DIOPT Version :9

Sequence 1:NP_001137905.1 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:NP_001239492.1 Gene:Matn4 / 17183 MGIID:1328314 Length:624 Species:Mus musculus


Alignment Length:292 Identity:77/292 - (26%)
Similarity:117/292 - (40%) Gaps:58/292 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   771 YALSEDMRTCQDIDECLDSNGQCSQLCLNQPGGFACACETGFELTPDGFGCADIDECSQDYGNCS 835
            :.|....|.|.. |.|.:....|..||:|.||.|.|||.:|::|.||...|..:|.|::....|.
Mouse   207 FGLQFQGRLCGK-DLCAELVHGCQHLCVNAPGTFYCACNSGYKLAPDNKN
CLALDLCAEGTHGCE 270

  Fly   836 DICINLLGTHACACERGYELAKDKLSCLDVDECAGLLSGGCSHECINKAGTFECGCPLGYILNDD 900
            .:|:|.:.::.|.|..|:.|.:|:.||..:|.|: ..:..|.|||::.....:|.|..|:.|..|
Mouse   271 HLCVNSVDSYFCRCRAGFALQQDQRSC
RAIDYCS-FGNHSCQHECVSTLEGPQCRCREGHDLLPD 334

  Fly   901 GRSCSPALVGCPPGTQRSADGCAPIECNPGYTLGSDDKCVDIDECQKQNGGCSHRCSNTEGSFKC 965
            ||||...                             |.|.|:|.      ||..:|.:...||.|
Mouse   335 GRSC
RVR-----------------------------DFCNDVDH------GCEFQCVSEGLSFHC 364

  Fly   966 SCPPGYELDSDQKTCQDIDECDQDKTSCITGT-------------CINEIGGFRCEFPKFPVLPE 1017
            .||.|..|.:|.|:|....|...|....:.|:             .:|:|..|      ..|.||
Mouse   365 LCPEGRRLQADGKSCDRCREGHVDLVLLVDGSKSVRPQNFELVKRFVNQIVDF------LDVSPE 423

  Fly  1018 IPTASSLPESPKIELKTP--KYPDFTELSNEI 1047
            ......:..|.::..:.|  :|....|:...:
Mouse   424 GTRVGLVQFSSRVRTEFPLGRYGTAAEVKQAV 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_001137905.1 FXa_inhibition 296..331 CDD:291342
cEGF 396..415 CDD:289433
FXa_inhibition 425..458 CDD:291342
FXa_inhibition 476..505 CDD:291342
vWFA <550..586 CDD:294047
FXa_inhibition 596..630 CDD:291342
FXa_inhibition 636..>664 CDD:291342
EGF_CA 676..715 CDD:284955
FXa_inhibition 745..780 CDD:291342 2/8 (25%)
FXa_inhibition 786..821 CDD:291342 15/34 (44%)
FXa_inhibition 827..862 CDD:291342 9/34 (26%)
FXa_inhibition 874..904 CDD:291342 11/29 (38%)
FXa_inhibition 945..980 CDD:291342 12/34 (35%)
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
DUF5011 1468..1536 CDD:295940
Matn4NP_001239492.1 vWA_Matrilin 33..255 CDD:238752 19/48 (40%)
FXa_inhibition 262..297 CDD:291342 9/34 (26%)
FXa_inhibition 303..338 CDD:291342 12/35 (34%)
FXa_inhibition 344..379 CDD:291342 15/40 (38%)
vWA_Matrilin 385..621 CDD:238752 12/77 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BA2W
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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