DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment frac and thbd

DIOPT Version :9

Sequence 1:NP_001137905.1 Gene:frac / 38850 FlyBaseID:FBgn0035798 Length:1618 Species:Drosophila melanogaster
Sequence 2:XP_017208183.1 Gene:thbd / 108180329 ZFINID:ZDB-GENE-110411-281 Length:515 Species:Danio rerio


Alignment Length:442 Identity:124/442 - (28%)
Similarity:166/442 - (37%) Gaps:133/442 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   626 DGKSCEDVDECLVNNGGCQQVCRNLPGSYGCICAAGYE------LLKLD------GIRGYCFDID 678
            ||| |..|.....|....|:||....|....|..|...      |||.:      |:|   :..:
Zfish    26 DGK-CFVVQTDTANFDAAQKVCEERTGHLMTIRTAKLADVLSRLLLKGESGNFWIGLR---YVGN 86

  Fly   679 ECSQRTHG---------------------------------------CSDQM---LCE--NLNGS 699
            |||.|..|                                       |||::   :||  |||. 
Zfish    87 ECSDRLKGYKWITGDDTSHFSNWKRESDCAPSCVSVSQNDHKWTERPCSDRIDGYVCEYNNLNH- 150

  Fly   700 YTCLCPPGYALGLDNHIVTSLNSSF-----------ITDSTSSETPSAHTCLDID------ECSL 747
                |||   |..|..:..|....|           :|::|..:..:.|.|.|.:      .|.:
Zfish   151 ----CPP---LSTDEKVHYSTAFGFTSNELLREIPELTNATRLDLRTKHICFDSEWLHAPWNCEV 208

  Fly   748 ANGNCSHFCQNEPGGFQCACPLGYALSEDMRTC---QDIDECLDSNGQCSQLCLNQPGGFACACE 809
            .:|.|.:.|......:.|.|..|:.|..:..:|   ||.|.|  ::..|...|....|.|||.|.
Zfish   209 FDGGCDYTCVRNGQSYACICQPGFKLDTNGISCSQQQDDDPC--AHAGCEHECARDSGAFACTCR 271

  Fly   810 TGFELTPDGFGCADIDECSQDYGNCSDICINLLGTHACACERGYELAKDKLSCLDVDECAGLLSG 874
            .||.|:.||..|.:         ||....||         |.|        .|:||||||   :|
Zfish   272 PGFTLSADGKSCKE---------NCKPGYIN---------ENG--------GCVDVDECA---TG 307

  Fly   875 GCSHECINKAGTFECGCPLGY-ILNDDGRSCSPALVGCPPGTQRSADGCAP-----IECNPGYTL 933
            .|.|:|.|..|:::|.|..|| ....|...|.   :.||  ..|....|.|     .:|..|:..
Zfish   308 PCEHDCANTEGSYQCVCFDGYKPAAKDMHKCK---MHCP--DMRCKAECDPNNDYQCDCPDGFLF 367

  Fly   934 GSDDK-CVDIDECQKQNGGCSHRCSNTEGSFKCSCPPGYELDSDQKTCQDID 984
            ..||: |||:|||...| .|...|:||.|||:|.|..||.| .|...|:|::
Zfish   368 DEDDRYCVDVDECISTN-DCDQNCTNTPGSFECFCHEGYVL-LDNGVCEDLE 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
fracNP_001137905.1 FXa_inhibition 296..331 CDD:291342
cEGF 396..415 CDD:289433
FXa_inhibition 425..458 CDD:291342
FXa_inhibition 476..505 CDD:291342
vWFA <550..586 CDD:294047
FXa_inhibition 596..630 CDD:291342 3/3 (100%)
FXa_inhibition 636..>664 CDD:291342 7/33 (21%)
EGF_CA 676..715 CDD:284955 18/82 (22%)
FXa_inhibition 745..780 CDD:291342 8/34 (24%)
FXa_inhibition 786..821 CDD:291342 13/34 (38%)
FXa_inhibition 827..862 CDD:291342 6/34 (18%)
FXa_inhibition 874..904 CDD:291342 11/30 (37%)
FXa_inhibition 945..980 CDD:291342 15/34 (44%)
CCP 1110..1170 CDD:153056
CCP 1183..1235 CDD:153056
DUF5011 1468..1536 CDD:295940
thbdXP_017208183.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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