DRSC/TRiP Functional Genomics Resources

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Protein Alignment lqf and Mycbpap

DIOPT Version :9

Sequence 1:NP_729266.2 Gene:lqf / 38846 FlyBaseID:FBgn0028582 Length:831 Species:Drosophila melanogaster
Sequence 2:XP_038942462.1 Gene:Mycbpap / 494192 RGDID:1359123 Length:1024 Species:Rattus norvegicus


Alignment Length:891 Identity:168/891 - (18%)
Similarity:264/891 - (29%) Gaps:345/891 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 PWGPSAAIMSEIAELTYNVVAFSEIMQMIWKRLNDHGKNW-RHV----YKALILLEYLIKTGSEK 100
            ||.|         .|.:|.:                 ||| ||:    .:..:|.|:|.|..|| 
  Rat   273 PWAP---------PLQHNFL-----------------KNWRRHITLRKKQQEVLSEHLKKPASE- 310

  Fly   101 VAQQCKENIFAIQTLREFVYFEEGKDQGTHVREKAKQLVTLLKDDERLKNER---VKAQKAKERF 162
            :.....|....||..||.:      |:....:...|.:.......|.|.:|:   :..:|.|:| 
  Rat   311 LLMNSGEGYRKIQEEREAI------DRALPTQHDRKAMNCFWSPLEYLGDEKSGLLMTKKKKQR- 368

  Fly   163 AQNPSGFGSDGYIDGPSQRDLPPGWQEEPPKSVSELEMVRPQTAGEEELQLQLAMAMSREEAEQE 227
                                                .:|.|.|...:...:|:...:    ..|:
  Rat   369 ------------------------------------GLVEPITHIRKPFSIQMETGL----PVQK 393

  Fly   228 EA-------------KRRSDDVRLQLALSQSEQDFKD----PNGRPI-------PAPKKEEQQSH 268
            :|             .||.:...:...|..|:||...    .:|:|.       |.|.::.|:|.
  Rat   394 DAWYRYTWDRSLFLIYRRKELQNIMAELDFSQQDIDGLEVVGHGKPFSSVTVEEPLPLEKSQKSS 458

  Fly   269 LLDLLDISLGATSISS----PPLGAA---GGAPTAVVDPWAMPGPRAPSQLSDPWSGTSSPQVDP 326
            ..|.:.:. ..|::|.    |.||.:   .|.|..                   |...|:|: |.
  Rat   459 SEDTVFLD-SLTNLSDMVPMPILGPSLLFCGKPAC-------------------WIRGSNPE-DK 502

  Fly   327 WNPSAAPRTILGAGVPMTSAPLGAGNDAWGARTQSP-SVASGSSNEGW--------------LQS 376
            .|        :|.||.:|...|.      |.:|.|. :|.:..:...|              |:.
  Rat   503 KN--------IGIGVRLTFETLE------GEKTSSELTVVNNGTVAIWYDWRRRPQQDFFQDLKQ 553

  Fly   377 NGNA-----NQNG---RGATP----------AGPPAEGWLIKSTAVGALGAAPINHAANNGSSSS 423
            |...     |:.|   .|.|.          ||...|.|.. .|....||.|.:....:..|.:.
  Rat   554 NRTQRFYFNNREGVILPGETKHFTFFFKSRNAGIFMESWEF-GTHPTLLGGAALQITLHAISLTQ 617

  Fly   424 DPWLAE----PAASAAGGAAAV----------GLADPWAPGAASQTGAGALDDP----------- 463
            |.::.|    .:..||..|..:          |::.|  ..|.|...|...::.           
  Rat   618 DIFMDERKLLESKLAAHEAVTIAQSVLQDLLRGVSTP--ERAPSPVDAYLTEEDLFHYRNPRLHY 680

  Fly   464 -----------W------KALGTGAIKKQSPEFDEFDLITNRNKSEHSNSNASNNNNASLLDDMD 511
                       |      ||....|:..::|   ...|:......:||.:.||.........:||
  Rat   681 QHRVVQNLHQLWQQYTEAKASQEEALNLRTP---TVPLLFVEKPPDHSRTLASEYPQLQPHQEMD 742

  Fly   512 PLSANYGNGGINSSMHPSTGATAK----KSIKDAHSFLGENSALVNLDNLIKPIAPQTQTGNQPA 572
            .|     ....||.:...||.:.|    |||               ::.::....|..:....|.
  Rat   743 TL-----KDPKNSLLPQKTGISTKSMQRKSI---------------MEEILVEEGPDRENTRSPR 787

  Fly   573 YNPFSDNVVPPKTNL----FQQQQPAVP-------SINQLKQQAPFSVSMNQDP----------- 615
               ..:|:.|||.||    |:|.....|       ::.|| .:|...:...|.|           
  Rat   788 ---VLENLPPPKWNLCLEDFRQAVMTFPEELQREDALIQL-NKAAMELCQEQKPLQSDLLYQMCL 848

  Fly   616 --WAPVMGGVSTTS----------------------QPKLPP--PVRPTSLNLGP----SSVGEF 650
              |..|:..:.:.|                      ..|.||  .|:.||..||.    ....|.
  Rat   849 QLWRDVIDSLVSQSLWLRSLLGLPEKETVYLDIPDEGQKSPPVTEVKVTSGKLGKEDRRGGAQEK 913

  Fly   651 QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQ----------SSSSTNILGKSNIPTNMNSSTSNS 705
            :.|||........:..|..:.:.  .|:..|          |:|...:|  |..|...:|:||..
  Rat   914 KQLSARDKEEKKGSKTPSKEQDR--LNSKKQKAKDDKKVVKSTSRDRLL--SEDPPADSSATSQE 974

  Fly   706 TIHSCYASPSPGVDGIRNMDIFTERPYYNSPTAPADDTYMYNSRDN 751
            .|       .|.|     |:.:|:|.|          :.:|...||
  Rat   975 PI-------DPLV-----MEKYTQRLY----------SEVYGLLDN 998

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lqfNP_729266.2 ENTH_epsin 28..149 CDD:239627 24/112 (21%)
UIM 208..227 CDD:197845 1/18 (6%)
MycbpapXP_038942462.1 MYCBPAP 279..694 CDD:405349 92/517 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166337635
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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