DRSC/TRiP Functional Genomics Resources

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Protein Alignment lqf and clint1a

DIOPT Version :9

Sequence 1:NP_729266.2 Gene:lqf / 38846 FlyBaseID:FBgn0028582 Length:831 Species:Drosophila melanogaster
Sequence 2:NP_001003412.1 Gene:clint1a / 323870 ZFINID:ZDB-GENE-030131-2590 Length:633 Species:Danio rerio


Alignment Length:733 Identity:175/733 - (23%)
Similarity:288/733 - (39%) Gaps:195/733 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NLAHNYSDAQVKVREATSNDPWGPSAAIMSEIAELTYNVVAFSEIMQMIWKR-LNDHGKNWRHVY 84
            |:..||::.:.||||||::||||||..:|.|||..|:....|.|:|.|:|.| |.|:.||||.||
Zfish    16 NVVMNYTETESKVREATNDDPWGPSGQLMGEIARCTFMYEQFPEVMNMLWTRMLKDNKKNWRRVY 80

  Fly    85 KALILLEYLIKTGSEKVAQQCKENIFAIQTLREFVYFEE-GKDQGTHVREKAKQLVTLLKDDERL 148
            |:|:||.|||:.|||:|....:|:::.::::..:...:| |||||.:||:|.|:|:..::||:||
Zfish    81 KSLLLLAYLIRNGSERVVTSAREHLYDLRSIESYHCVDENGKDQGVNVRQKVKELIEFVQDDDRL 145

  Fly   149 KNERVKAQKAKERF----AQNPSGFG-SDGYIDGPSQRDLPPGWQEEPPKSVSELEMVRPQTAGE 208
            :.||.||:|.::::    :.:.|||. |:...|....|.   .|.::..|:......  .:..||
Zfish   146 REERKKAKKNRDKYIGVSSDSMSGFRYSEDRFDSREPRS---KWDDDWEKNKGAFPF--SEKLGE 205

  Fly   209 ------EELQLQLAMAMSREEAEQEEAKRRSDDVRLQLALSQS-EQDFKDPNGRPIPAPKKEEQQ 266
                  ..:...:.|...::..:..:....:|:.|......|| :.:|||          .||..
Zfish   206 ISDKIGSTIDDTINMFRKKDREDSPDRFSEADEERRGTRNGQSGKSEFKD----------DEETV 260

  Fly   267 SHLLDLLDISLGATSISSPPLGAAGGAPTAVVDPWAMPGPRAPSQLSDPWSGTSSPQVDPWNPSA 331
            :                                                   |.|.|:.....:.
Zfish   261 T---------------------------------------------------TKSVQIVQATETT 274

  Fly   332 APRTILGAGVPMTSAPLGAGNDAWGARTQSPSVASGSSNEGWLQSNGNANQNGRG--------AT 388
            |.|.   .|||..:..|||.....|.:      :|.:||.....:....:|...|        ..
Zfish   275 ATRK---KGVPSKTIDLGAAAHYTGDK------SSNNSNTNQTTTTSAVSQPSSGLVDLFSADPA 330

  Fly   389 PAGPPAEGWLIKSTAVG---------ALGAAPINHA---ANNGSSSSDPWLAEPAASAAGGAAAV 441
            ||.|.::|  :.|..:|         |..:.|.:.|   :.||....| |.|.|||.     .||
Zfish   331 PAQPASKG--LSSDLIGGFADFSSPAAAASLPSSTAPASSGNGGDFGD-WNAFPAAQ-----QAV 387

  Fly   442 GLADPWAPGAASQTGAGALDDPWKALGTGAIKKQSPEFDEFDLITNRNKSEHSNSNASNNNNASL 506
            ..|.|..|....      |...::.....|....:|..|.|||:   ..|:.:|.:.|.:.|.|:
Zfish   388 PAAQPVNPAGID------LFSGFQTAPAPAPVSTAPSSDLFDLM---GSSQTTNFSTSQSLNFSM 443

  Fly   507 LDDMD---PLSANYGNGGINSSMHPSTGATAKKSIKDAHSFLGENSALVNLDNLIKPIAPQTQTG 568
            .....   |.|.:..:..:...:.|......|.:.|........||   |:|..:..:.|..|  
Zfish   444 TTSQTIGMPTSKSQPSQTMGVPLMPQQPMAQKPNPKAPVPSTWSNS---NVDISLDYLGPGMQ-- 503

  Fly   569 NQPAYNPFSDNVVPPKTNLFQQQQPAVPSINQLKQ--QAPFSV----------------SMNQDP 615
                         |||        |:.|:::.::|  |.|.::                ||.:.|
Zfish   504 -------------PPK--------PSQPTLSMMQQGGQTPVNMMTQGFAGMNLGMQAAPSMVRPP 547

  Fly   616 WAPVMGGVSTTSQPKLPPPVRPTSLNLGPSSVGEFQLLSALSNPIIPIAHIPQPQPNLQVYNNAY 680
            ...::||::.:.||             |.:|       |.:|.|  .:..:|..|..:.:..|..
Zfish   548 TNTMVGGMNMSMQP-------------GMTS-------SPMSMP--QMGGMPVNQGMMGMNMNMG 590

  Fly   681 QSSSSTNILGKSNIPTNM 698
            .|:::..:.|...:.|.|
Zfish   591 MSAATMGMPGGMGMGTGM 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lqfNP_729266.2 ENTH_epsin 28..149 CDD:239627 57/122 (47%)
UIM 208..227 CDD:197845 2/24 (8%)
clint1aNP_001003412.1 ENTH_epsin 23..146 CDD:239627 57/122 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1263849at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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