DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and CYR1

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_012529.3 Gene:CYR1 / 853452 SGDID:S000003542 Length:2026 Species:Saccharomyces cerevisiae


Alignment Length:633 Identity:150/633 - (23%)
Similarity:266/633 - (42%) Gaps:137/633 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 VELSCEKLESFNAVVDSLANKLNADTNIDLKITHSQLDDLEMRSFTD----MNF--NLYKLRMQW 94
            :.|.|.:|||..|....|.|              .||.||....|..    :|:  ||.::.:.:
Yeast   891 LNLQCNELESLPAGFVELKN--------------LQLLDLSSNKFMHYPEVINYCTNLLQIDLSY 941

  Fly    95 NSLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQ------QEDF 153
            |.::|||: ..:.|..:..:::..|.|:.|..  ||.|..|.||::...:|.:::      |..|
Yeast   942 NKIQSLPQ-STKYLVKLAKMNLSHNKLNFIGD--LSEMTDLRTLNLRYNRISSIKTNASNLQNLF 1003

  Fly   154 RGIQRVTN----------LILVSNIITRLD-RGSFPKSLLILHLGRNQLESLNGS-LHDLHNLES 206
            ....|::|          |.:..|.||.:. :..:||::..|.|.:.||.|:.|. |..|..||.
Yeast  1004 LTDNRISNFEDTLPKLRALEIQENPITSISFKDFYPKNMTSLTLNKAQLSSIPGELLTKLSFLEK 1068

  Fly   207 LFINANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRSFDRVLRN-- 269
            |.:|.||:|.|..|:....:|..|....|:||.:|..::.:.||.|:.:|.|.:|.|...:.|  
Yeast  1069 LELNQNNLTRLPQEISKLTKLVFLSVARNKLEYIPPELSQLKSLRTLDLHSNNIRDFVDGMENLE 1133

  Fly   270 --AVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSL----------NSSLLPI----L 318
              ::|:|.....|:.||.         |....:..|....|||          :.::.|:    :
Yeast  1134 LTSLNISSNAFGNSSLEN---------SFYHNMSYGSKLSKSLMFFIAADNQFDDAMWPLFNCFV 1189

  Fly   319 KLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELMLVNLDLDNNRIDSLN 383
            .||..|.|:|:..:.|..:   |.|:..|.||.|::..|..| ..::...|..|.|::|::.||.
Yeast  1190 NLKVLNLSYNNFSDVSHMK---LESITELYLSGNKLTTLSGD-TVLKWSSLKTLMLNSNQMLSLP 1250

  Fly   384 GALAGLGNLRILNLAGNRLEH-LQVGDFDGMIR----LDILDLTGNQLAELKPL----------E 433
            ..|:.|..|.:.::..|:|:: :....:|...|    |..|:.:||:..|:|..          :
Yeast  1251 AELSNLSQLSVFDVGANQLKYNISNYHYDWNWRNNKELKYLNFSGNRRFEIKSFISHDIDADLSD 1315

  Fly   434 MTLLPSLKILKV--AYNNITKLEQDFKGLPVLCQANLTN----------NQISTISSELVTNTRC 486
            :|:||.||:|.:  ...|.||:..:.....:...|::.|          .|...:||..||..|.
Yeast  1316 LTVLPQLKVLGLMDVTLNTTKVPDENVNFRLRTTASIINGMRYGVADTLGQRDYVSSRDVTFERF 1380

  Fly   487 KNHNVPGKLEIHLDDNPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLPI 551
            :.:          ||..::|   |::             .::|..:....:..::..:|:   .|
Yeast  1381 RGN----------DDECLLC---LHD-------------SKNQNADYGHNISRIVRDIYD---KI 1416

  Fly   552 MVTNLKLTGREVPKPMVRVIVPSLIKANNELLPPLIATLGNPVLISTD 599
            ::..|:..|.|....:...:..|.::.|.|:         |.:|.|.|
Yeast  1417 LIRQLERYGDETDDNIKTALRFSFLQLNKEI---------NGMLNSVD 1455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 120/479 (25%)
leucine-rich repeat 65..86 CDD:275380 6/26 (23%)
leucine-rich repeat 87..110 CDD:275380 6/22 (27%)
leucine-rich repeat 111..134 CDD:275380 6/22 (27%)
leucine-rich repeat 135..158 CDD:275380 6/28 (21%)
leucine-rich repeat 159..180 CDD:275380 6/31 (19%)
leucine-rich repeat 181..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..226 CDD:275380 9/21 (43%)
leucine-rich repeat 227..249 CDD:275380 6/21 (29%)
leucine-rich repeat 250..272 CDD:275380 7/25 (28%)
leucine-rich repeat 273..296 CDD:275380 4/22 (18%)
leucine-rich repeat 297..315 CDD:275380 4/27 (15%)
leucine-rich repeat 320..335 CDD:275378 5/14 (36%)
leucine-rich repeat 344..366 CDD:275380 6/21 (29%)
leucine-rich repeat 367..391 CDD:275380 8/23 (35%)
leucine-rich repeat 392..415 CDD:275380 4/23 (17%)
leucine-rich repeat 416..439 CDD:275380 8/32 (25%)
leucine-rich repeat 440..462 CDD:275380 6/23 (26%)
leucine-rich repeat 463..483 CDD:275380 6/29 (21%)
CYR1NP_012529.3 MSCRAMM_ClfA 188..>366 CDD:468110
Ad_cyc_g-alpha 368..418 CDD:430040
RA_PHLPP_like 678..776 CDD:340473
leucine-rich repeat 796..817 CDD:275380
LRR 818..1252 CDD:443914 103/390 (26%)
leucine-rich repeat 818..839 CDD:275380
leucine-rich repeat 840..864 CDD:275380
leucine-rich repeat 865..887 CDD:275380
leucine-rich repeat 888..910 CDD:275380 7/18 (39%)
leucine-rich repeat 911..933 CDD:275380 6/21 (29%)
leucine-rich repeat 934..956 CDD:275380 6/22 (27%)
leucine-rich repeat 957..978 CDD:275380 6/22 (27%)
leucine-rich repeat 979..1018 CDD:275380 8/38 (21%)
leucine-rich repeat 1019..1041 CDD:275380 5/21 (24%)
leucine-rich repeat 1042..1065 CDD:275380 8/22 (36%)
leucine-rich repeat 1066..1088 CDD:275380 9/21 (43%)
leucine-rich repeat 1089..1111 CDD:275380 6/21 (29%)
leucine-rich repeat 1167..1187 CDD:275380 2/19 (11%)
leucine-rich repeat 1191..1211 CDD:275380 7/22 (32%)
leucine-rich repeat 1236..1258 CDD:275380 8/21 (38%)
leucine-rich repeat 1259..1287 CDD:275380 5/27 (19%)
PP2C 1374..1617 CDD:395385 20/120 (17%)
CYCc 1613..1825 CDD:214485
Blue background indicates that the domain is not in the aligned region.

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