DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and Igfals

DIOPT Version :9

Sequence 1:NP_001261524.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_445781.3 Gene:Igfals / 79438 RGDID:68429 Length:603 Species:Rattus norvegicus


Alignment Length:631 Identity:162/631 - (25%)
Similarity:247/631 - (39%) Gaps:157/631 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QCSVRPEISPCTCETGKAWNHVELSCEKLESFNAVVDSLANKLNADTNIDLKITHSQLDDLEMRS 79
            ||.|     .|||......:.:.:.|.                      ...:||.. ||:.:.:
  Rat    40 QCPV-----ACTCSHDDYTDELSVFCS----------------------SKNLTHLP-DDIPVST 76

  Fly    80 FTDMNFNLYKLRMQW---NSLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIG 141
                       |..|   |:|.|:|...|:.||::.:|::..:.|..:...||..:.:|..|.:.
  Rat    77 -----------RALWLDGNNLSSIPSAAFQNLSSLDFLNLQGSWLRSLEPQALLGLQNLYHLHLE 130

  Fly   142 RCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFP--KSLLILHLGRNQLESLNGSL-HDLHN 203
            |.::|.:....|.....:.:|.|.||::.||:.|.|.  ..|..|:||.|.|..|..:: ..|.|
  Rat   131 RNRLRNLAVGLFTHTPSLASLSLSSNLLGRLEEGLFQGLSHLWDLNLGWNSLVVLPDTVFQGLGN 195

  Fly   204 LESLFINANNITSLDDELPDG-GQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRS--FDR 265
            |..|.:..|.:|.|...|..| |:||.|....|.|..:.||         |.:|..:|:.  .||
  Rat   196 LHELVLAGNKLTYLQPALFCGLGELRELDLSRNALRSVKAN---------VFVHLPRLQKLYLDR 251

  Fly   266 VLRNAV-------------------NLSEVMAD--------------NNELEYLAQDEFASCSKV 297
            .|..||                   .::.:|.|              :|.:..|....|.....:
  Rat   252 NLITAVAPRAFLGMKALRWLDLSHNRVAGLMEDTFPGLLGLHVLRLAHNAIASLRPRTFKDLHFL 316

  Fly   298 ETLQMGCNHIKSLNS------SLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQR 356
            |.||:|.|.|:.|..      ..|.:|.|.:     |.|.|..:....||.::..:.||.|.: |
  Rat   317 EELQLGHNRIRQLGERTFEGLGQLEVLTLND-----NQITEVRVGAFSGLFNVAVMNLSGNCL-R 375

  Fly   357 LLPDP--RGVQELMLVNLD----------------------LDNNRIDSL-NGALAGLGNLRILN 396
            .||:.  :|:.:|..::|:                      |.:|.|.|: ..:||||..|..|:
  Rat   376 SLPERVFQGLDKLHSLHLEHSCLGHVRLHTFAGLSGLRRLFLRDNSISSIEEQSLAGLSELLELD 440

  Fly   397 LAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPSLKILKVAYNNITKLEQD-FKGL 460
            |..|||.||....|.|:..|:.|.|:.|||..|....:..|.....|.:::|::..|.:. |..|
  Rat   441 LTTNRLTHLPRQLFQGLGHLEYLLLSYNQLTTLSAEVLGPLQRAFWLDISHNHLETLAEGLFSSL 505

  Fly   461 PVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDDNPIMCDVGLNELCRLMAVQEARIR 525
            ..|...:|.||.:.|.|.:            ||...:.||.||..|...|..| |..|:|...:.
  Rat   506 GRLRYLSLRNNSLQTFSPQ------------PGLERLWLDANPWDCSCPLKAL-RDFALQNPGVV 557

  Fly   526 GR---SQCFEND-QEVCTVLPMLYNVNL----PIMVTNLKLTGREV 563
            .|   :.|..:| |.|.|     || |:    |..|:.|.|  |:|
  Rat   558 PRFVQTVCEGDDCQPVYT-----YN-NITCAGPANVSGLDL--RDV 595

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_001261524.1 leucine-rich repeat 65..86 CDD:275380 4/20 (20%)
LRR_8 86..145 CDD:290566 16/61 (26%)
leucine-rich repeat 87..110 CDD:275380 8/25 (32%)
leucine-rich repeat 111..134 CDD:275380 4/22 (18%)
leucine-rich repeat 135..158 CDD:275380 5/22 (23%)
LRR_8 158..214 CDD:290566 20/58 (34%)
leucine-rich repeat 159..180 CDD:275380 8/22 (36%)
leucine-rich repeat 181..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..226 CDD:275380 7/22 (32%)
LRR_RI 226..451 CDD:238064 72/290 (25%)
leucine-rich repeat 227..249 CDD:275380 7/21 (33%)
leucine-rich repeat 250..272 CDD:275380 8/42 (19%)
leucine-rich repeat 273..296 CDD:275380 5/36 (14%)
leucine-rich repeat 297..315 CDD:275380 7/23 (30%)
LRR_8 319..402 CDD:290566 27/107 (25%)
leucine-rich repeat 320..335 CDD:275378 4/14 (29%)
leucine-rich repeat 344..366 CDD:275380 7/23 (30%)
leucine-rich repeat 367..391 CDD:275380 10/46 (22%)
LRR_8 369..426 CDD:290566 23/79 (29%)
leucine-rich repeat 392..415 CDD:275380 10/22 (45%)
leucine-rich repeat 416..439 CDD:275380 8/22 (36%)
LRR_8 438..>479 CDD:290566 11/41 (27%)
leucine-rich repeat 440..462 CDD:275380 5/22 (23%)
leucine-rich repeat 463..483 CDD:275380 6/19 (32%)
IgfalsNP_445781.3 LRRNT 40..78 CDD:214470 11/76 (14%)
leucine-rich repeat 57..75 CDD:275380 5/40 (13%)
PLN00113 68..>494 CDD:215061 117/452 (26%)
LRR 1 75..96 7/31 (23%)
leucine-rich repeat 79..99 CDD:275380 7/19 (37%)
LRR 2 99..120 4/20 (20%)
leucine-rich repeat 103..123 CDD:275380 4/19 (21%)
LRR 3 123..144 5/20 (25%)
LRR 4 147..168 8/20 (40%)
LRR 5 171..192 7/20 (35%)
leucine-rich repeat 175..195 CDD:275380 7/19 (37%)
LRR 6 195..216 7/20 (35%)
leucine-rich repeat 196..219 CDD:275380 7/22 (32%)
LRR 7 219..240 8/29 (28%)
leucine-rich repeat 220..243 CDD:275380 9/31 (29%)
LRR 8 243..264 6/20 (30%)
leucine-rich repeat 244..267 CDD:275380 6/22 (27%)
LRR 9 267..288 2/20 (10%)
leucine-rich repeat 268..291 CDD:275380 2/22 (9%)
LRR 10 291..312 3/20 (15%)
leucine-rich repeat 292..315 CDD:275380 3/22 (14%)
LRR 11 315..336 7/20 (35%)
leucine-rich repeat 316..339 CDD:275380 7/22 (32%)
LRR 12 339..360 6/25 (24%)
leucine-rich repeat 340..363 CDD:275380 8/27 (30%)
LRR 13 363..384 6/21 (29%)
leucine-rich repeat 364..387 CDD:275380 7/23 (30%)
LRR 14 387..408 2/20 (10%)
leucine-rich repeat 388..411 CDD:275380 2/22 (9%)
LRR 15 411..432 5/20 (25%)
leucine-rich repeat 412..435 CDD:275380 8/22 (36%)
LRR 16 435..456 9/20 (45%)
leucine-rich repeat 436..459 CDD:275380 10/22 (45%)
LRR 17 459..480 7/20 (35%)
leucine-rich repeat 460..481 CDD:275380 7/20 (35%)
LRR 18 483..504 4/20 (20%)
leucine-rich repeat 484..507 CDD:275380 5/22 (23%)
LRR_8 486..536 CDD:404697 15/61 (25%)
LRR 19 507..528 8/32 (25%)
TPKR_C2 535..578 CDD:417692 16/49 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.010

Return to query results.
Submit another query.