DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and Cpn2

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_082180.2 Gene:Cpn2 / 71756 MGIID:1919006 Length:547 Species:Mus musculus


Alignment Length:507 Identity:121/507 - (23%)
Similarity:200/507 - (39%) Gaps:144/507 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    64 DLKITHSQLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHA 128
            ||:||.|.:.:|....|:::: :|.||.:.::.|..|||                 ||       
Mouse   101 DLEITGSPVSNLSAHIFSNLS-SLEKLTLDFDRLAGLPE-----------------DL------- 140

  Fly   129 LSHMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPK--SLLILHLGRNQL 191
            ..||..|.:|.:...::|.:....|:.::.:..|.|..|::|:|.:|:|..  .|.:|.|..|.|
Mouse   141 FCHMDILESLQLQGNQLRTLPGRLFQSLRDLRTLNLAQNLLTQLPKGAFQSLTGLQMLKLSNNML 205

  Fly   192 ESL-NGSLHDLHNLESLFINANNITSLDDEL-PDGGQLRLLMAHNNRLERLPANM-AGMHSLETV 253
            ..| .|:|..|.:|:.||::.|.||.|...| .....|.:|...:|.:..||.:: :.:|:|..:
Mouse   206 ARLPEGALGSLSSLQELFLDGNAITELSPHLFSQLFSLEMLWLQHNAICHLPVSLFSSLHNLTFL 270

  Fly   254 HIHCNQLRSF-DRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNSSLLPI 317
            .:..|.||:. :.:..:...|..:....|:||.:.:..|.:.|::.:|.:..|.|          
Mouse   271 SLKDNALRTLPEGLFAHNQGLLHLSLSYNQLETIPEGAFTNLSRLVSLTLSHNAI---------- 325

  Fly   318 LKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELMLVNLDLDNNRIDSL 382
                      .|:.|      |..|:|:                      .||.|.||:|.:.:|
Mouse   326 ----------TDLPE------HVFRNLE----------------------QLVKLSLDSNNLTAL 352

  Fly   383 NGAL-AGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPSLKILKVA 446
            :.|| ..|..|::|||:.|:|..|..|.||....|..|.|.||                      
Mouse   353 HPALFHNLSRLQLLNLSRNQLTTLPGGIFDTNYDLFNLALLGN---------------------- 395

  Fly   447 YNNITKLEQDFKGLPVLCQANLT---------NNQISTISSELVTNTRCKN-HNVPGKLEIHLDD 501
                          |..|..:|:         |||||.      |:|.|.. ..:.|:|..:|..
Mouse   396 --------------PWQCDCHLSYLTSWLRLYNNQISN------THTFCAGPAYLKGQLVPNLKQ 440

  Fly   502 NPIMCDVGLNELC-RLMAVQEAR--------IRGR---SQCFENDQEVCTVL 541
            ..::|.|....|. |.:.:.|..        :.||   |||..::.|...:|
Mouse   441 EQLICPVNPGHLSFRALGLDEGEPAGSWDLTVEGRAAHSQCAYSNPEGTVLL 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 102/426 (24%)
leucine-rich repeat 65..86 CDD:275380 6/20 (30%)
leucine-rich repeat 87..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..134 CDD:275380 4/22 (18%)
leucine-rich repeat 135..158 CDD:275380 4/22 (18%)
leucine-rich repeat 159..180 CDD:275380 7/22 (32%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 8/22 (36%)
leucine-rich repeat 227..249 CDD:275380 5/22 (23%)
leucine-rich repeat 250..272 CDD:275380 4/22 (18%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 3/17 (18%)
leucine-rich repeat 320..335 CDD:275378 2/14 (14%)
leucine-rich repeat 344..366 CDD:275380 1/21 (5%)
leucine-rich repeat 367..391 CDD:275380 10/24 (42%)
leucine-rich repeat 392..415 CDD:275380 10/22 (45%)
leucine-rich repeat 416..439 CDD:275380 5/22 (23%)
leucine-rich repeat 440..462 CDD:275380 0/21 (0%)
leucine-rich repeat 463..483 CDD:275380 7/28 (25%)
Cpn2NP_082180.2 LRRNT 21..52 CDD:214470
LRR_5 51..>128 CDD:463839 10/27 (37%)
leucine-rich repeat 75..98 CDD:275380
LRR 1 98..119 7/17 (41%)
leucine-rich repeat 99..122 CDD:275380 7/21 (33%)
LRR 102..395 CDD:443914 92/365 (25%)
LRR 2 122..143 9/44 (20%)
leucine-rich repeat 123..146 CDD:275380 11/46 (24%)
LRR 3 146..167 4/20 (20%)
leucine-rich repeat 147..170 CDD:275380 4/22 (18%)
LRR 4 170..191 7/20 (35%)
leucine-rich repeat 171..194 CDD:275380 7/22 (32%)
LRR 5 194..215 8/20 (40%)
leucine-rich repeat 195..218 CDD:275380 9/22 (41%)
LRR 6 218..239 8/20 (40%)
leucine-rich repeat 219..242 CDD:275380 8/22 (36%)
LRR 7 242..263 5/20 (25%)
leucine-rich repeat 243..266 CDD:275380 5/22 (23%)
LRR 8 266..287 4/20 (20%)
leucine-rich repeat 267..290 CDD:275380 4/22 (18%)
LRR 9 290..311 5/20 (25%)
leucine-rich repeat 291..314 CDD:275380 5/22 (23%)
LRR 10 314..335 6/46 (13%)
leucine-rich repeat 315..338 CDD:275380 8/70 (11%)
LRR 11 338..359 9/20 (45%)
leucine-rich repeat 339..360 CDD:275380 9/20 (45%)
LRR 12 362..383 9/20 (45%)
leucine-rich repeat 363..382 CDD:275380 8/18 (44%)
PCC 367..>448 CDD:188093 28/122 (23%)
Blue background indicates that the domain is not in the aligned region.

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