DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and Lingo3

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001103079.1 Gene:Lingo3 / 690755 RGDID:1592209 Length:589 Species:Rattus norvegicus


Alignment Length:608 Identity:133/608 - (21%)
Similarity:218/608 - (35%) Gaps:174/608 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 RCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLN-GSLHDLHNLE 205
            ||:..|..:....|.:|          :|.:..| .|....:|.|.||::..|| |.|..|..||
  Rat    27 RCECSASTRTVACGRRR----------LTAVPEG-IPAETRMLELSRNRIRCLNPGDLASLPTLE 80

  Fly   206 SLFINANNITSLDD----ELPDGGQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRSFDRV 266
            .|.:|.|.|..::.    .||   :||:|....|:|:.:|..         |..|.:.|...|  
  Rat    81 ELDLNHNVIAHVEPGAFANLP---RLRVLRLRGNQLKLIPPG---------VFTHLDSLTLLD-- 131

  Fly   267 LRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLN----SSLLPILKLKNANFSF 327
                  |||     |:|..|....|.....::.|::|.|.:..::    :.||.:.:|.....:.
  Rat   132 ------LSE-----NKLVILLDFSFQDLRSLQRLEVGDNDLVFISRRAFAGLLGLAELTLERCNL 185

  Fly   328 NDIEEFSMAELHGLRSLKTLQLSSNRIQ----RLLPD----------------PRGVQELMLVNL 372
            ..:...|:..|.||.:|:...|:...::    :.||.                |..::.|.|.:|
  Rat   186 TSLSPESLGHLRGLGALRLRHLAIAALEDQNFQKLPGLLHLEIDNWPLLEEVAPGSLRGLNLTSL 250

  Fly   373 DLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTL 436
            .:.:..|.:: ..||....:|..|||:.|.:..:..|.|..::||..|.|.|..||.::|     
  Rat   251 SITHTNITAVPAAALRQQAHLTCLNLSHNPISMVPRGSFRDLVRLRELHLAGALLAVIEP----- 310

  Fly   437 LPSLKILKVAYNNITKLEQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDD 501
                              |.|.||..:...||::|.:||:..    ||   .|:|.....:.:|.
  Rat   311 ------------------QAFVGLRQIRLLNLSDNLLSTLEE----NT---FHSVNTLETLRVDG 350

  Fly   502 NPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLPIMVTNLKLTG---REV 563
            ||:.||      |||:.:.:.|                 ..:.::..||...|..::.|   ..:
  Rat   351 NPLACD------CRLLWIVQRR-----------------KTLNFDGRLPACATPAEVRGDALHNL 392

  Fly   564 P-----------KPMVRVIVPSLIKANNELLPPLIATLGNPVLISTDLVNPVISPLPPPLLLATT 617
            |           ||.:|          ...|..:.||.|:.|..   |......|.|   .:|..
  Rat   393 PDSVLFEYFVCRKPKIR----------ERRLQHVTATEGDDVRF---LCRAEGEPAP---TVAWV 441

  Fly   618 TPP---------------PPLPLPVESEVEKNESTTANPVPTN------YTQETTTTTSTTTTTT 661
            ||.               |...|.: ::....:|.|...|.:|      |....|...:...|.:
  Rat   442 TPQHHSVTAASRGRARVLPGGTLAI-TDTRPQDSGTYTCVASNAGGNDTYFATLTIHPAANRTQS 505

  Fly   662 TTETSSQVA---PIEIITTTAPT 681
            .....:||.   |:::.|....|
  Rat   506 DGHNETQVGVRFPLDLTTILVST 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 86/363 (24%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380
leucine-rich repeat 111..134 CDD:275380
leucine-rich repeat 135..158 CDD:275380 4/15 (27%)
leucine-rich repeat 159..180 CDD:275380 3/20 (15%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 8/25 (32%)
leucine-rich repeat 227..249 CDD:275380 6/21 (29%)
leucine-rich repeat 250..272 CDD:275380 4/21 (19%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
leucine-rich repeat 297..315 CDD:275380 3/21 (14%)
leucine-rich repeat 320..335 CDD:275378 1/14 (7%)
leucine-rich repeat 344..366 CDD:275380 5/41 (12%)
leucine-rich repeat 367..391 CDD:275380 6/24 (25%)
leucine-rich repeat 392..415 CDD:275380 7/22 (32%)
leucine-rich repeat 416..439 CDD:275380 7/22 (32%)
leucine-rich repeat 440..462 CDD:275380 4/21 (19%)
leucine-rich repeat 463..483 CDD:275380 5/19 (26%)
Lingo3NP_001103079.1 LRRNT 23..55 CDD:214470 8/38 (21%)
leucine-rich repeat 34..53 CDD:275380 4/29 (14%)
leucine-rich repeat 55..78 CDD:275380 9/22 (41%)
LRR <56..>349 CDD:443914 83/347 (24%)
leucine-rich repeat 79..102 CDD:275380 8/25 (32%)
leucine-rich repeat 103..150 CDD:275380 17/68 (25%)
leucine-rich repeat 151..174 CDD:275380 4/22 (18%)
leucine-rich repeat 175..198 CDD:275380 3/22 (14%)
leucine-rich repeat 199..222 CDD:275380 4/22 (18%)
leucine-rich repeat 223..246 CDD:275380 1/22 (5%)
leucine-rich repeat 247..270 CDD:275380 5/22 (23%)
leucine-rich repeat 271..292 CDD:275380 7/20 (35%)
leucine-rich repeat 295..316 CDD:275380 9/43 (21%)
leucine-rich repeat 319..342 CDD:275380 9/29 (31%)
PCC 331..>405 CDD:188093 19/103 (18%)
Ig 407..489 CDD:472250 18/98 (18%)
Ig strand B 424..428 CDD:409353 1/6 (17%)
Ig strand C 437..441 CDD:409353 1/3 (33%)
Ig strand E 462..466 CDD:409353 1/3 (33%)
Ig strand F 476..481 CDD:409353 1/4 (25%)
Blue background indicates that the domain is not in the aligned region.

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