DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and Nepn

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:XP_006512881.1 Gene:Nepn / 66650 MGIID:1913900 Length:561 Species:Mus musculus


Alignment Length:558 Identity:135/558 - (24%)
Similarity:221/558 - (39%) Gaps:130/558 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 TVFHLASLQCSVRPEISPCTCETGKAWNHVEL---------------------SCEKLESFNAV- 49
            :|..|..::..|.||....||:. ..|....|                     ||:.::|.... 
Mouse    23 SVIRLRGIKSKVSPEQLLATCKP-LCWTMHPLWAFLLGLSLTNGLSANCPGRCSCDSMQSVQCYR 86

  Fly    50 VDSLANKLNADTNIDLKITHSQLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYL 114
            :..|.:.:.:.|. .|.|:||::..|::.:||.: ..|....:..:..:|:....|:.||.:..|
Mouse    87 LMELPSGIPSTTK-RLYISHSRIQHLQLSNFTGL-LALEDFILLASGTESIENDTFKTLSTLKTL 149

  Fly   115 SIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPK 179
            .:..|.|.::|....:::..|...|...|.:|.   .:|.|:                      |
Mouse   150 ELWKNKLRQVPSALPANLEVLKLNDNAICALRG---SEFEGL----------------------K 189

  Fly   180 SLLILHLGRNQLESLNGS-LHDLHNLESLFINANNITSLDD--ELPDGGQLRLLMAHNNRLERLP 241
            :|.:|.|..|.:.||:.| |..|.:|:||.::.|||.|:..  .||   .|:.:...||:|..:|
Mouse   190 NLKVLELKNNLISSLSPSMLSPLASLQSLMVDGNNIESVVGPLSLP---HLKYMSMENNQLHLIP 251

  Fly   242 ANM------------AG----------MHSLETVHIHCNQLRSFD-RVLRNAVNLSEVMADNNEL 283
            .|:            :|          ..||.::.:..|||:... |.:::..|||.:....|.|
Mouse   252 GNVFTSLQNLQFLSFSGNFLTKIPINLPKSLLSLKMERNQLKVVRFRDMKHLENLSHLYLSENFL 316

  Fly   284 EYLAQDEFASCSKVETLQMGCNHIKSLNSSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQ 348
            ..:  |.....:.:.||::..|.::.|...|..  :|:..:.|.|.|:..:..|...||.||.|.
Mouse   317 SSI--DGAQQLTNLTTLEVSQNQLQMLPPRLPS--RLQKLDCSSNFIQRVTAPEFQDLRDLKHLF 377

  Fly   349 LSSN--------RIQR-------------LLPDPRGVQELMLVNLDLDNNRI-DSLNGALAGLGN 391
            |.:|        .:||             ||..|..:.: .|..|||..|.| |.....|..|..
Mouse   378 LDNNVVSLFEAGALQRCSQLSNLALEQNLLLSIPLRLPK-TLARLDLKGNAIQDMAERELRDLKQ 441

  Fly   392 LRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMT--LLPSLKILKVAYNNITKLE 454
            |::|||..||:..|.....:|:.||..|.|.||      |...|  ||.:.::||.         
Mouse   442 LQVLNLRNNRISALDFKALEGLPRLRHLYLDGN------PWNCTCSLLRAREVLKA--------- 491

  Fly   455 QDFKGLPV---LCQANLTNNQISTISSELVTNTRCKNH 489
               ||..|   .|.|.......|.:||:.:.. :|::|
Mouse   492 ---KGTDVKGGQCAAPAERQGESWMSSKKILR-QCEHH 525

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 117/463 (25%)
leucine-rich repeat 65..86 CDD:275380 7/20 (35%)
leucine-rich repeat 87..110 CDD:275380 4/22 (18%)
leucine-rich repeat 111..134 CDD:275380 4/22 (18%)
leucine-rich repeat 135..158 CDD:275380 6/22 (27%)
leucine-rich repeat 159..180 CDD:275380 0/20 (0%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 9/23 (39%)
leucine-rich repeat 227..249 CDD:275380 7/43 (16%)
leucine-rich repeat 250..272 CDD:275380 5/22 (23%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 4/17 (24%)
leucine-rich repeat 320..335 CDD:275378 4/14 (29%)
leucine-rich repeat 344..366 CDD:275380 10/42 (24%)
leucine-rich repeat 367..391 CDD:275380 9/24 (38%)
leucine-rich repeat 392..415 CDD:275380 8/22 (36%)
leucine-rich repeat 416..439 CDD:275380 9/24 (38%)
leucine-rich repeat 440..462 CDD:275380 4/21 (19%)
leucine-rich repeat 463..483 CDD:275380 5/19 (26%)
NepnXP_006512881.1 leucine-rich repeat 101..121 CDD:275380 7/20 (35%)
leucine-rich repeat 122..145 CDD:275380 4/22 (18%)
leucine-rich repeat 146..166 CDD:275380 4/19 (21%)
LRR 161..>477 CDD:443914 90/354 (25%)
leucine-rich repeat 167..190 CDD:275380 6/47 (13%)
leucine-rich repeat 191..214 CDD:275380 9/22 (41%)
leucine-rich repeat 215..236 CDD:275380 9/23 (39%)
leucine-rich repeat 237..260 CDD:275380 6/22 (27%)
leucine-rich repeat 261..305 CDD:275380 7/43 (16%)
leucine-rich repeat 282..297 CDD:275380 4/14 (29%)
leucine-rich repeat 306..327 CDD:275380 5/22 (23%)
leucine-rich repeat 328..348 CDD:275380 5/21 (24%)
leucine-rich repeat 349..372 CDD:275380 6/22 (27%)
leucine-rich repeat 373..396 CDD:275380 7/22 (32%)
leucine-rich repeat 397..420 CDD:275380 4/23 (17%)
leucine-rich repeat 421..441 CDD:275380 8/19 (42%)
leucine-rich repeat 442..465 CDD:275380 8/22 (36%)

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