DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and chadla

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:XP_017210255.1 Gene:chadla / 565474 ZFINID:ZDB-GENE-121205-4 Length:791 Species:Danio rerio


Alignment Length:810 Identity:179/810 - (22%)
Similarity:291/810 - (35%) Gaps:270/810 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 NSLKSLP----EVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRG 155
            |:|..:|    |:       :..|.:..|:..|:||:|..|.|.|..|.:..|.::||::..|||
Zfish    40 NNLTHIPPTIDEI-------IVKLDLKKNNFGELPKNAFKHTPYLTQLSLQGCSVQAVREGAFRG 97

  Fly   156 IQRVTNLILVSNIITRLDRGSFP--KSLLILHLGRNQLESLN-GSLHDLHNLESLFINANNITSL 217
            :.|:..|.|.:|.|..|.:.||.  .||..|:|.||::|.:: |:...|::|..|.:..|.:..|
Zfish    98 LSRLLQLDLTNNNIDILYQESFDGLSSLKQLYLDRNRIEEIHPGAFAALNSLNLLSLTYNQLVYL 162

  Fly   218 DDELPDGGQLRLLMAH--NNRLERLPAN-MAGMHSLETVHIHCNQLRSF-DRVLRNAVNLSEVMA 278
            .: :...|.:.:.|.|  :|.|..|... .||:.:|..:::..|:|:.| .:.:...:.::.:..
Zfish   163 PN-MAFQGMMNIQMLHLSHNSLNNLATEAFAGLLALTHLNLDHNELQYFPTKTMTRLIEVTHLDM 226

  Fly   279 DNNELEYLAQD------------------------------------EFASCSKVETLQMGCNHI 307
            ..|.:.||.::                                    .|...|.::.| ....|:
Zfish   227 SYNPMTYLVEESVVMPKLTHLSLKHNALQDLSESTISLSPVISHLDLSFNQLSYIQAL-AASTHL 290

  Fly   308 KSLNSSLLPI-------------LK-------------------LKNA-----------NFSFND 329
            .|||.:..||             ||                   |:|.           .::.:.
Zfish   291 TSLNLTGNPIRCTCLLRDLKLWALKSGIRLFGVCAWPPHLSDEPLENVQEQDLRCRPQDEWTSDV 355

  Fly   330 IEEFSMAELHGLRSLKTLQLSSNRIQRLLPD-------------------------PR------- 362
            |||.:..|..|::. ||:..:.::..|..|.                         ||       
Zfish   356 IEEGTKEEEEGVQE-KTVSTAKSKKTRKCPKDCLCEYAAQHATCENRGHTKVPSGFPRKTLLLDM 419

  Fly   363 --------------GVQELMLVNLDLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDG 412
                          |:.|  :|:|.||:.:|..: .||..|:.||..|.|:.|:|..|....|:|
Zfish   420 RGNHFHYLPSKSFPGIPE--VVSLHLDSCKIHEIEGGAFQGMKNLIYLYLSDNQLSSLDAKVFEG 482

  Fly   413 MIRLDILDLTGNQLAELKPLEMTL--LPSLKILKVAYNNITKLEQDFKGLPVLCQAN--LTNNQI 473
            ...:..|.|..|:|... |...||  :|.|..|.:..|.|.|||......|||....  |.||.|
Zfish   483 AHEIMYLHLEDNKLTHF-PSSATLTHIPKLLELHLERNLIAKLEPSGLLSPVLQLTGLYLNNNSI 546

  Fly   474 STISSELVTNTRCKNHNVPGKLE-------IHLDDNPIMCDVGLNELCRLMAVQEARIRGRSQCF 531
            :||              ||..|:       :||:|| ::.||..:      |:..|         
Zfish   547 ATI--------------VPKALDPAPKLDVLHLEDN-VLTDVPSD------ALDHA--------- 581

  Fly   532 ENDQEVCTVLPMLYNVNLPIMVTNLKLTGREVPKPMVRVIVPSLIKANNELLPP-LIATLG---- 591
                      |:|         |.|.|:|.     ::|.|.|...:...|.|.. ||..:|    
Zfish   582 ----------PLL---------TELHLSGN-----LIRWIGPRAFRVVAESLKNLLIDRMGLQKM 622

  Fly   592 --------NPVLISTDLVNPVISPLPP---------------PLLLATTTPP-----PPLPLPVE 628
                    .|.|:|..|.:.::..||.               ||:......|     ..:.|.||
Zfish   623 SVRSLAGFGPRLLSLSLEDNLLEELPDLSPLAGLQNLSLNKNPLMCDCKLLPFYRWLEKMSLRVE 687

  Fly   629 ------SEVEKNESTTANPVPTNYTQETTTTTSTTTTTT----------TTETSSQVAPIEII-T 676
                  ||: :.:|...:.:..|.:.|...:.:.|:..|          |..|....|.:::. |
Zfish   688 AVCFYPSEL-RGQSVMESAIYKNCSIENAHSFNETSIPTKAHEPNIPNPTQPTEPSYAKLKLAKT 751

  Fly   677 TTAPTTTTTSTTTPKPNETLPVIVELQDPN 706
            ..|.|...|.:...||...|    ::..||
Zfish   752 KIAATPKKTKSKEFKPERAL----KMTRPN 777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 121/521 (23%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380 4/18 (22%)
leucine-rich repeat 111..134 CDD:275380 7/22 (32%)
leucine-rich repeat 135..158 CDD:275380 8/22 (36%)
leucine-rich repeat 159..180 CDD:275380 7/22 (32%)
leucine-rich repeat 181..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..226 CDD:275380 4/21 (19%)
leucine-rich repeat 227..249 CDD:275380 7/24 (29%)
leucine-rich repeat 250..272 CDD:275380 4/22 (18%)
leucine-rich repeat 273..296 CDD:275380 4/58 (7%)
leucine-rich repeat 297..315 CDD:275380 5/17 (29%)
leucine-rich repeat 320..335 CDD:275378 5/25 (20%)
leucine-rich repeat 344..366 CDD:275380 7/67 (10%)
leucine-rich repeat 367..391 CDD:275380 8/24 (33%)
leucine-rich repeat 392..415 CDD:275380 8/22 (36%)
leucine-rich repeat 416..439 CDD:275380 7/24 (29%)
leucine-rich repeat 440..462 CDD:275380 7/21 (33%)
leucine-rich repeat 463..483 CDD:275380 7/21 (33%)
chadlaXP_017210255.1 LRRNT 22..49 CDD:396168 3/8 (38%)
LRR 40..>344 CDD:443914 69/312 (22%)
leucine-rich repeat 55..76 CDD:275380 7/20 (35%)
leucine-rich repeat 77..100 CDD:275380 8/22 (36%)
leucine-rich repeat 101..124 CDD:275380 7/22 (32%)
leucine-rich repeat 125..148 CDD:275380 8/22 (36%)
leucine-rich repeat 149..172 CDD:275380 5/23 (22%)
leucine-rich repeat 173..196 CDD:275380 7/22 (32%)
leucine-rich repeat 197..220 CDD:275380 4/22 (18%)
leucine-rich repeat 221..243 CDD:275380 3/21 (14%)
leucine-rich repeat 244..267 CDD:275380 0/22 (0%)
LRR_8 417..472 CDD:404697 15/56 (27%)
leucine-rich repeat 417..437 CDD:275380 1/19 (5%)
leucine-rich repeat 438..461 CDD:275380 8/22 (36%)
LRR <455..>666 CDD:443914 66/265 (25%)
leucine-rich repeat 462..485 CDD:275380 8/22 (36%)
leucine-rich repeat 486..510 CDD:275380 7/24 (29%)
leucine-rich repeat 511..535 CDD:275380 9/23 (39%)
leucine-rich repeat 536..559 CDD:275380 9/36 (25%)
leucine-rich repeat 560..583 CDD:275380 8/48 (17%)
leucine-rich repeat 584..608 CDD:275380 8/37 (22%)
leucine-rich repeat 609..633 CDD:275380 4/23 (17%)
leucine-rich repeat 634..656 CDD:275380 5/21 (24%)
LRRCT 664..>699 CDD:214507 8/35 (23%)
Blue background indicates that the domain is not in the aligned region.

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