DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and Lrrc17

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001020326.1 Gene:Lrrc17 / 502715 RGDID:1560165 Length:446 Species:Rattus norvegicus


Alignment Length:409 Identity:90/409 - (22%)
Similarity:152/409 - (37%) Gaps:127/409 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 VYTVFHLASLQCSVR------PEISPCTCETGKAWN----HVELSCEKLESFNAVVDSLANKLNA 59
            |||..|...|.|..|      |:           |.    |:.|:..|:   ..:.:::.:|...
  Rat    61 VYTYLHEKYLDCQERKLVYVLPD-----------WPQDLLHMLLARNKI---RVLKNNMFSKFKR 111

  Fly    60 DTNIDLKITHSQLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDNDLDEI 124
            ..::||:  .:::..:|..:|..:| .|..|.:|.|.:|.|.|..|.....::||.:.||     
  Rat   112 LKSLDLQ--QNEISKIESEAFFGLN-KLTTLLLQHNQIKVLTEEVFIYTPLLSYLRLYDN----- 168

  Fly   125 PKHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRN 189
            |.|....:.:|:::         :|      |.|..||            |::.|.         
  Rat   169 PWHCACELETLVSM---------LQ------IPRNRNL------------GNYAKC--------- 197

  Fly   190 QLESLNGSLHDLHNLESLFINANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAGMHSLETVH 254
                  ||...|.|.:.|.:....:  .|:|            ...||:.:|             
  Rat   198 ------GSPPALRNKKLLQLKPQEL--CDEE------------EKERLDPIP------------- 229

  Fly   255 IHCNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNSSLLP-IL 318
                |:.....|:|...:  ..:..|    |:...:...|.:.|        :|.:.:::.| |:
  Rat   230 ----QVSGVPAVIRPEAD--STLCHN----YVFPIQTLDCKRKE--------LKKVPNNIPPNIV 276

  Fly   319 KLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELM-LVNLDLDNNRIDSL 382
            ||   :.|:|.|.:....|...:..||.|.||||.::.:  ||.....|: |..|||.||.:.|.
  Rat   277 KL---DLSYNKISQLRPKEFEDVHELKKLNLSSNGLEFI--DPAAFLGLIHLEELDLSNNSLQSF 336

  Fly   383 N-GALAGLGNLRILNLAGN 400
            : |.|..|..|::|.|..|
  Rat   337 DYGVLEDLYFLKLLWLRDN 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 76/339 (22%)
leucine-rich repeat 65..86 CDD:275380 4/20 (20%)
leucine-rich repeat 87..110 CDD:275380 8/22 (36%)
leucine-rich repeat 111..134 CDD:275380 6/22 (27%)
leucine-rich repeat 135..158 CDD:275380 3/22 (14%)
leucine-rich repeat 159..180 CDD:275380 3/20 (15%)
leucine-rich repeat 181..203 CDD:275380 3/21 (14%)
leucine-rich repeat 204..226 CDD:275380 3/21 (14%)
leucine-rich repeat 227..249 CDD:275380 3/21 (14%)
leucine-rich repeat 250..272 CDD:275380 3/21 (14%)
leucine-rich repeat 273..296 CDD:275380 3/22 (14%)
leucine-rich repeat 297..315 CDD:275380 2/17 (12%)
leucine-rich repeat 320..335 CDD:275378 4/14 (29%)
leucine-rich repeat 344..366 CDD:275380 9/21 (43%)
leucine-rich repeat 367..391 CDD:275380 11/25 (44%)
leucine-rich repeat 392..415 CDD:275380 4/9 (44%)
leucine-rich repeat 416..439 CDD:275380
leucine-rich repeat 440..462 CDD:275380
leucine-rich repeat 463..483 CDD:275380
Lrrc17NP_001020326.1 leucine-rich repeat 68..86 CDD:275380 5/28 (18%)
LRR <89..>356 CDD:443914 81/370 (22%)
leucine-rich repeat 89..111 CDD:275380 4/24 (17%)
leucine-rich repeat 112..135 CDD:275380 5/25 (20%)
leucine-rich repeat 136..159 CDD:275380 8/22 (36%)
PCC 141..>247 CDD:188093 33/185 (18%)
leucine-rich repeat 160..210 CDD:275380 18/96 (19%)
leucine-rich repeat 211..274 CDD:275380 13/107 (12%)
leucine-rich repeat 275..298 CDD:275380 7/25 (28%)
leucine-rich repeat 299..322 CDD:275380 10/24 (42%)
leucine-rich repeat 323..346 CDD:275380 10/22 (45%)
Blue background indicates that the domain is not in the aligned region.

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