DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and rtn4rl2b

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_982350.1 Gene:rtn4rl2b / 403309 ZFINID:ZDB-GENE-040310-2 Length:457 Species:Danio rerio


Alignment Length:362 Identity:87/362 - (24%)
Similarity:147/362 - (40%) Gaps:94/362 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 CTCETGKAWNH--------VELSCEKLESFNAVVDSLANKLNADTNIDLK---ITHSQLDDLEMR 78
            |.|..|:|...        :.:||:. ::|.:|        .|....|.:   :.::::.:|...
Zfish    33 CRCAPGQACPRLCVCYHMPMTVSCQS-QNFTSV--------PAGVPYDSQRVFLQNNRITELRAD 88

  Fly    79 SFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGD-NDLDEIPKHALSHMPSLLTLDIGR 142
            ||.      ::.::.|  |.|         :|:|::..|. ::|..:.:..||..|||..||.|.
Zfish    89 SFG------FETQVLW--LYS---------NNITWIEAGAFSNLRVLEELDLSDNPSLRRLDGGA 136

  Fly   143 CKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLNGSL-HDLHNLES 206
                      |||::|:.:                      ||:.|..|..|...| |.|::|:.
Zfish   137 ----------FRGLERLQS----------------------LHMHRCHLTELPADLFHKLYSLQF 169

  Fly   207 LFINANNITSLDDEL-PDGGQLRLLMAHNNRLERLPAN-MAGMHSLETVHIHCNQLRSFD-RVLR 268
            |::..|.:|:|.|.| .|...|..|..|.||:..:..| ..|:.:|:.:.:|.|::|... |..|
Zfish   170 LYLQENQLTNLPDGLFSDLVNLTHLFLHGNRIRTVSENAFRGLVNLDRLLLHDNRIRQVHRRSFR 234

  Fly   269 NAVNLSEVMADNNELEYLAQDEFASCSKVETLQM-------GCNHIKSLNSSLLPILKLKNANFS 326
            :...|:.:...||.|:.|........|.|:.|::       || ..:||..      ..:.|..|
Zfish   235 DLGRLTILYLFNNSLQELPGQALRDTSSVQFLRLNGNPWTCGC-EARSLWE------WFRKARIS 292

  Fly   327 FNDIEEFSMAELHG--LRSLKTLQLSSNRIQRLLPDP 361
            .:|:...|.|...|  ||.|:.|..:...    ||||
Zfish   293 SSDLTCSSPAPRKGQDLRFLRELDFALCP----LPDP 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 77/314 (25%)
leucine-rich repeat 65..86 CDD:275380 3/23 (13%)
leucine-rich repeat 87..110 CDD:275380 3/22 (14%)
leucine-rich repeat 111..134 CDD:275380 5/23 (22%)
leucine-rich repeat 135..158 CDD:275380 7/22 (32%)
leucine-rich repeat 159..180 CDD:275380 0/20 (0%)
leucine-rich repeat 181..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..226 CDD:275380 8/22 (36%)
leucine-rich repeat 227..249 CDD:275380 7/22 (32%)
leucine-rich repeat 250..272 CDD:275380 6/22 (27%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 6/24 (25%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 6/18 (33%)
leucine-rich repeat 367..391 CDD:275380
leucine-rich repeat 392..415 CDD:275380
leucine-rich repeat 416..439 CDD:275380
leucine-rich repeat 440..462 CDD:275380
leucine-rich repeat 463..483 CDD:275380
rtn4rl2bNP_982350.1 LRRNT 40..71 CDD:214470 6/39 (15%)
leucine-rich repeat 53..70 CDD:275380 5/25 (20%)
LRR <73..>271 CDD:443914 59/246 (24%)
leucine-rich repeat 73..93 CDD:275380 3/25 (12%)
leucine-rich repeat 95..117 CDD:275380 7/32 (22%)
leucine-rich repeat 118..142 CDD:275380 11/33 (33%)
leucine-rich repeat 143..166 CDD:275380 8/44 (18%)
leucine-rich repeat 167..190 CDD:275380 8/22 (36%)
leucine-rich repeat 191..214 CDD:275380 7/22 (32%)
leucine-rich repeat 215..238 CDD:275380 6/22 (27%)
leucine-rich repeat 239..262 CDD:275380 5/22 (23%)
LRRCT 271..316 CDD:214507 13/51 (25%)
Blue background indicates that the domain is not in the aligned region.

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