DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and rtn4rl2a

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_982346.1 Gene:rtn4rl2a / 403307 ZFINID:ZDB-GENE-040310-4 Length:458 Species:Danio rerio


Alignment Length:373 Identity:84/373 - (22%)
Similarity:144/373 - (38%) Gaps:73/373 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 ITHSQLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDN-DLDEIPKHALS 130
            :.::::.:|.:.||.   |....|.:..|::..:....|..|.::..|.:||| :|..:...|..
Zfish    77 LQNNRITELRVGSFA---FGTQVLWLFSNNITWIEAGAFSELRDLEELDLGDNPNLHRLEGGAFR 138

  Fly   131 HMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLN 195
            .:..|.:|.:.|||:.|:..:.|..:.                      ||..|:|..|||..:.
Zfish   139 GLEKLQSLHMHRCKLAALPHDIFHKLY----------------------SLQFLYLQENQLHFIQ 181

  Fly   196 GSLH-DLHNLESLFINANNITSLDDEL-------------------------PDGGQLRLLMAHN 234
            ..|. ||.||..||::.|.|.:|.:.:                         .|.|||.:|...|
Zfish   182 DDLFADLINLSQLFLHGNRIRTLSENVFRGLVNLDRLLLHDNRVRQVNRRAFRDLGQLTMLFLFN 246

  Fly   235 NRLERLPAN-MAGMHSLETVHIHCN------QLRSFDRVLRNA-VNLSEVMADN------NELEY 285
            |.|..||.. |..:.|:|.:.::.|      :.|......|.| ::.|||:..:      .:|.:
Zfish   247 NSLAELPGQAMRDVSSIEFLRLNNNPWACGCEARPLWEFFRGARLSSSEVLCASPASRRGQDLRF 311

  Fly   286 LAQDEFASCSKVETLQM-GCNHIKSLNSSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQL 349
            |.:.:||.|...:...: |.........:.....|.|..:.|....|:.|..:.|.....|:...
Zfish   312 LREMDFALCPLPDPGSLAGTTTTTFSTKTRWWFSKNKPVSTSKGIFEKSSETKAHPYTGGKSSVT 376

  Fly   350 SSNRIQRLLPDPRGVQELMLVNLDLDNNRIDSLNGALAGLGNLRILNL 397
            |::....|     |.:|.:|..||.:....:..|.. ||:.:||...|
Zfish   377 STSTKYEL-----GEEEALLPKLDPEEYWANYGNED-AGITSLRCFEL 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 84/373 (23%)
leucine-rich repeat 65..86 CDD:275380 3/18 (17%)
leucine-rich repeat 87..110 CDD:275380 4/22 (18%)
leucine-rich repeat 111..134 CDD:275380 6/23 (26%)
leucine-rich repeat 135..158 CDD:275380 7/22 (32%)
leucine-rich repeat 159..180 CDD:275380 0/20 (0%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 7/46 (15%)
leucine-rich repeat 227..249 CDD:275380 8/22 (36%)
leucine-rich repeat 250..272 CDD:275380 5/28 (18%)
leucine-rich repeat 273..296 CDD:275380 8/28 (29%)
leucine-rich repeat 297..315 CDD:275380 1/18 (6%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 4/21 (19%)
leucine-rich repeat 367..391 CDD:275380 6/23 (26%)
leucine-rich repeat 392..415 CDD:275380 3/6 (50%)
leucine-rich repeat 416..439 CDD:275380
leucine-rich repeat 440..462 CDD:275380
leucine-rich repeat 463..483 CDD:275380
rtn4rl2aNP_982346.1 leucine-rich repeat 53..70 CDD:275380
LRR <73..>254 CDD:443914 47/201 (23%)
leucine-rich repeat 73..93 CDD:275380 3/18 (17%)
leucine-rich repeat 95..117 CDD:275380 4/21 (19%)
leucine-rich repeat 118..142 CDD:275380 6/23 (26%)
leucine-rich repeat 143..166 CDD:275380 7/44 (16%)
leucine-rich repeat 167..190 CDD:275380 9/22 (41%)
leucine-rich repeat 191..214 CDD:275380 6/22 (27%)
leucine-rich repeat 215..238 CDD:275380 1/22 (5%)
leucine-rich repeat 239..262 CDD:275380 8/22 (36%)
LRRCT 271..316 CDD:214507 9/44 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.