DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and CG4168

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_609740.4 Gene:CG4168 / 34889 FlyBaseID:FBgn0028888 Length:1330 Species:Drosophila melanogaster


Alignment Length:746 Identity:162/746 - (21%)
Similarity:283/746 - (37%) Gaps:245/746 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 QLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPS- 134
            ||.:|.:.|..|   ||.: .:||   |.|...|.|  .::..|.:|.|.::.:.........| 
  Fly   308 QLPELRIVSLRD---NLIR-SVQW---KELQVRPLR--MHLERLDLGQNCIENLESDYFQQNYSD 363

  Fly   135 --LLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSF---PKSLLILHLGRNQLESL 194
              |..|::.:..:..:.:..|:. ..:.:|:|..|.|:|:...:|   .::|..|.|.||:|.::
  Fly   364 VHLRALNLEQNFVTQLPEAVFKA-TGIAHLVLAFNAISRVHPSAFEGLTETLEYLDLERNRLTTV 427

  Fly   195 NGSLHDLHNLESLFINANNITSLDD---------------------------------------- 219
            ..:|..||:|:.|::.:|.|:.|::                                        
  Fly   428 PVALSSLHHLKYLYLTSNQISQLNNLPSFTENLRVLSLSGNNFSMIPVLGLKNYTQLSYLNMGYN 492

  Fly   220 ---ELPD--------GGQLRLLMAHNNRLERLP-ANMAGMHSLETVHIHCNQLR-----SFDRVL 267
               ::|:        |..|:.::..||::..|. .:.||:..::.:.:..|.:.     .|:.|.
  Fly   493 SITDIPEGIFAVDSWGSNLQTILLRNNKITHLHLGSFAGLEQIQEISLSFNDITIHHPLVFENVS 557

  Fly   268 RN------------------------AVNLSEVM---ADNNELEYLAQDEFASCSKVETLQMGCN 305
            |.                        .:.||:::   .|||.|:.::.:.||...::..:.:..|
  Fly   558 RTLKILELSFAVFPARSLESLDPLDALLPLSQLIWLGLDNNNLKQVSNESFAQMRELSYINLSFN 622

  Fly   306 HIKSL---------NSSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDP 361
            .:|:|         :|.|:.|      :.|:|.:|.......|.|..|:||.|.|||::.:....
  Fly   623 QLKTLPRGLFQSDAHSHLVEI------DLSYNGLERLEAQTFHSLGDLQTLNLQSNRLRTIARHA 681

  Fly   362 RGVQELMLVNLDLDNNRIDSL-NGALAGLGNLRILNLAGNRL----------------------- 402
            ....| .|..|||..||:.:: :||...|.||..|:|..|:|                       
  Fly   682 FHNLE-FLRYLDLSYNRLVNISHGAFTVLPNLAALDLMHNQLCSLSLKSFLYVSNTTTPLRLNVS 745

  Fly   403 -EHL-----QVGDFDGMIRLDI--------------------LDLTGNQLAELKPLEMTLLPSLK 441
             .|:     ::..:..:.:|||                    |:|..|||..|:......|..|:
  Fly   746 HNHIASFYDELSSYMYIYQLDISHNHVTKSDSFTNLANTLRFLNLAHNQLGSLQSHAFGDLEFLE 810

  Fly   442 ILKVAYNNITKL-EQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEI-HLDDN-- 502
            ||.||:||:|.| .:.|:||..|.:.:|::||:..:..|..:|.|        ||.| .::.|  
  Fly   811 ILNVAHNNLTSLRRRSFQGLNSLQELDLSHNQLDQLQVEQFSNLR--------KLRILRINSNRL 867

  Fly   503 ----------------------------PIMCDVGLNELCRLMAVQEARIRGR---SQCFENDQE 536
                                        |...|:|..    |.::|.:.....   :..|.|.|.
  Fly   868 RALPREVFMNTRLEFLDIAENQLSVWPVPAFTDIGFT----LRSIQMSHNNLEYLDASMFINSQF 928

  Fly   537 V---------CTVLP--------MLYNVNL---PIMVTNLKLTGRE--VPKPMVRVIVPSLIKAN 579
            :         .|:||        .|.|::|   |::.|||    ||  |..|.:|.:  ||....
  Fly   929 LYDISLARNRITILPDNTFSFLNNLTNLDLSQNPLVTTNL----REVFVHTPRLRKL--SLHHMG 987

  Fly   580 NELLPPLIATLGNPVLISTDLVNPVISPLPP 610
            ..:||||..    |:|...|:....:..|.|
  Fly   988 LYVLPPLKL----PLLSYLDVSGNYLQELSP 1014

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 121/554 (22%)
leucine-rich repeat 65..86 CDD:275380 5/14 (36%)
leucine-rich repeat 87..110 CDD:275380 7/22 (32%)
leucine-rich repeat 111..134 CDD:275380 3/22 (14%)
leucine-rich repeat 135..158 CDD:275380 3/22 (14%)
leucine-rich repeat 159..180 CDD:275380 6/23 (26%)
leucine-rich repeat 181..203 CDD:275380 8/21 (38%)
leucine-rich repeat 204..226 CDD:275380 7/72 (10%)
leucine-rich repeat 227..249 CDD:275380 6/22 (27%)
leucine-rich repeat 250..272 CDD:275380 4/50 (8%)
leucine-rich repeat 273..296 CDD:275380 8/25 (32%)
leucine-rich repeat 297..315 CDD:275380 4/26 (15%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 7/21 (33%)
leucine-rich repeat 367..391 CDD:275380 9/24 (38%)
leucine-rich repeat 392..415 CDD:275380 6/51 (12%)
leucine-rich repeat 416..439 CDD:275380 10/42 (24%)
leucine-rich repeat 440..462 CDD:275380 12/22 (55%)
leucine-rich repeat 463..483 CDD:275380 5/19 (26%)
CG4168NP_609740.4 PRK15370 <69..>353 CDD:185268 16/53 (30%)
leucine-rich repeat 99..118 CDD:275380
leucine-rich repeat 122..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..194 CDD:275380
leucine-rich repeat 195..214 CDD:275380
leucine-rich repeat 215..236 CDD:275380
leucine-rich repeat 266..287 CDD:275380
leucine-rich repeat 288..311 CDD:275380 2/2 (100%)
leucine-rich repeat 312..338 CDD:275380 11/34 (32%)
LRR <338..651 CDD:443914 55/319 (17%)
leucine-rich repeat 339..365 CDD:275380 4/25 (16%)
leucine-rich repeat 366..388 CDD:275380 3/22 (14%)
leucine-rich repeat 389..412 CDD:275380 6/22 (27%)
leucine-rich repeat 414..436 CDD:275380 8/21 (38%)
leucine-rich repeat 437..459 CDD:275380 5/21 (24%)
leucine-rich repeat 460..483 CDD:275380 0/22 (0%)
leucine-rich repeat 484..510 CDD:275380 2/25 (8%)
leucine-rich repeat 511..534 CDD:275380 6/22 (27%)
leucine-rich repeat 535..589 CDD:275380 5/53 (9%)
LRR 543..971 CDD:443914 99/450 (22%)
leucine-rich repeat 590..613 CDD:275380 6/22 (27%)
leucine-rich repeat 614..639 CDD:275380 3/24 (13%)
leucine-rich repeat 640..663 CDD:275380 7/28 (25%)
leucine-rich repeat 664..687 CDD:275380 8/23 (35%)
leucine-rich repeat 688..711 CDD:275380 9/22 (41%)
leucine-rich repeat 712..735 CDD:275380 5/22 (23%)
leucine-rich repeat 740..783 CDD:275380 4/42 (10%)
leucine-rich repeat 785..808 CDD:275380 7/22 (32%)
leucine-rich repeat 809..832 CDD:275380 12/22 (55%)
leucine-rich repeat 833..856 CDD:275380 7/30 (23%)
leucine-rich repeat 857..879 CDD:275380 3/21 (14%)
leucine-rich repeat 880..900 CDD:275380 1/19 (5%)
leucine-rich repeat 905..928 CDD:275380 4/22 (18%)
LRR 911..>1203 CDD:443914 29/114 (25%)
leucine-rich repeat 929..952 CDD:275380 3/22 (14%)
leucine-rich repeat 953..977 CDD:275380 10/27 (37%)
leucine-rich repeat 978..1020 CDD:275380 12/43 (28%)
leucine-rich repeat 1045..1068 CDD:275380
leucine-rich repeat 1069..1090 CDD:275380
leucine-rich repeat 1091..1114 CDD:275380
leucine-rich repeat 1115..1161 CDD:275380
leucine-rich repeat 1162..1190 CDD:275380
PCC 1230..>1298 CDD:188093
Blue background indicates that the domain is not in the aligned region.

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