DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and Rtn4rl2

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:XP_006499655.1 Gene:Rtn4rl2 / 269295 MGIID:2669796 Length:480 Species:Mus musculus


Alignment Length:289 Identity:74/289 - (25%)
Similarity:106/289 - (36%) Gaps:94/289 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   162 LILVSNIITRLDRGSFPKSLLILHLGRNQLESLN-GSLHDLHNLESLFINANNITSLDDELPDGG 225
            |.|.:|:|..|..|:|..:||.|.|..|.|.::: |:...|..||.|            :|.|..
Mouse   125 LFLQNNLIRSLRPGTFGPNLLTLWLFSNNLSTIHPGTFRHLQALEEL------------DLGDNR 177

  Fly   226 QLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRSF-DRVLRNAVNLSEVMADNNELEYLAQD 289
            .||.|.         |....|:..|:::|::..||.|. ..:.|..|:|..:....|.|.:|..|
Mouse   178 HLRSLE---------PDTFQGLERLQSLHLYRCQLSSLPGNIFRGLVSLQYLYLQENSLLHLQDD 233

  Fly   290 EFASCSKVETLQMGCNHIKSLNSSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRI 354
            .||                                    |:...|...|||.|    |:|.:..:
Mouse   234 LFA------------------------------------DLANLSHLFLHGNR----LRLLTEHV 258

  Fly   355 QRLLPDPRGVQELMLVNLDLDNNRIDSLNGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDIL 419
            .|                               |||:|..|.|.||||:.:....|.|:.||.||
Mouse   259 FR-------------------------------GLGSLDRLLLHGNRLQGVHRAAFHGLSRLTIL 292

  Fly   420 DLTGNQLAELKPLEMTLLPSLKILKVAYN 448
            .|..|.||.|....:..||:|:.|::..|
Mouse   293 YLFNNSLASLPGEALADLPALEFLRLNAN 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 74/289 (26%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380
leucine-rich repeat 111..134 CDD:275380
leucine-rich repeat 135..158 CDD:275380
leucine-rich repeat 159..180 CDD:275380 7/17 (41%)
leucine-rich repeat 181..203 CDD:275380 8/22 (36%)
leucine-rich repeat 204..226 CDD:275380 5/21 (24%)
leucine-rich repeat 227..249 CDD:275380 5/21 (24%)
leucine-rich repeat 250..272 CDD:275380 6/22 (27%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
leucine-rich repeat 297..315 CDD:275380 0/17 (0%)
leucine-rich repeat 320..335 CDD:275378 1/14 (7%)
leucine-rich repeat 344..366 CDD:275380 3/21 (14%)
leucine-rich repeat 367..391 CDD:275380 2/23 (9%)
leucine-rich repeat 392..415 CDD:275380 9/22 (41%)
leucine-rich repeat 416..439 CDD:275380 9/22 (41%)
leucine-rich repeat 440..462 CDD:275380 3/9 (33%)
leucine-rich repeat 463..483 CDD:275380
Rtn4rl2XP_006499655.1 LRR <115..>321 CDD:443914 73/287 (25%)
leucine-rich repeat 122..143 CDD:275380 7/17 (41%)
leucine-rich repeat 144..167 CDD:275380 8/22 (36%)
leucine-rich repeat 168..192 CDD:275380 10/44 (23%)
leucine-rich repeat 193..216 CDD:275380 6/22 (27%)
leucine-rich repeat 217..240 CDD:275380 8/58 (14%)
leucine-rich repeat 241..264 CDD:275380 10/57 (18%)
leucine-rich repeat 265..288 CDD:275380 9/22 (41%)
leucine-rich repeat 289..312 CDD:275380 9/22 (41%)
LRRCT 321..371 CDD:214507 1/1 (100%)
PHA03247 349..>429 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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