DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and Vasn

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_647468.2 Gene:Vasn / 246154 MGIID:2177651 Length:673 Species:Mus musculus


Alignment Length:631 Identity:157/631 - (24%)
Similarity:224/631 - (35%) Gaps:153/631 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   127 HALSHMPSLLTLDI-----------GRCKIRAVQQEDFRGIQRVT----------NLILVSNIIT 170
            |:.|.:|.||.|.:           ..|:....|.......|..|          .|.:..|.||
Mouse     2 HSRSCLPPLLLLLLVLLGSGVQGCPSGCQCNQPQTVFCTARQGTTVPRDVPPDTVGLYIFENGIT 66

  Fly   171 RLDRGSFP--KSLLILHLGRNQLESLNGSL-HDLHNLESLFINANNITSLDDELPDGGQLRLLMA 232
            .||.|.|.  ..|.:|.|.:||:.||.|.: ..|.||.:|.:.||.:..:.:|...|  ||    
Mouse    67 TLDVGCFAGLPGLQLLDLSQNQITSLPGGIFQPLVNLSNLDLTANKLHEISNETFRG--LR---- 125

  Fly   233 HNNRLERLPANMAGMHSLETVHIHCNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKV 297
               |||||   ..|.:.:.  ||......:.||:|       |:...:|||..|..   ....::
Mouse   126 ---RLERL---YLGKNRIR--HIQPGAFDALDRLL-------ELKLPDNELRVLPP---LHLPRL 172

  Fly   298 ETLQMGCNHIKSLNSSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPR 362
            ..|.:..|.|.:|.:.:     |..||     :|...:|.| |||     ||......||     
Mouse   173 LLLDLSHNSIPALEAGI-----LDTAN-----VEALRLAGL-GLR-----QLDEGLFGRL----- 216

  Fly   363 GVQELMLVNLDLDNNRIDSLNGALAGLGNLRILNLAGN-RLEHLQVGDFDGMIRLDILDLTGNQL 426
                |.|.:||:.:|:::.:...:.||..|..|.|||| |:..::..|..|:..|..||::...|
Mouse   217 ----LNLHDLDVSDNQLEHMPSVIQGLRGLTRLRLAGNTRIAQIRPEDLAGLTALQELDVSNLSL 277

  Fly   427 AELKPLEMTLLPSLKILKVAYNNITKLEQDFKGLPVLCQANLT-------NNQISTISSELVTNT 484
            ..|.....:|.|.|::|..|.|            |..|...|:       .|.:...|.|   .|
Mouse   278 QALPSDLSSLFPRLRLLAAARN------------PFNCLCPLSWFGPWVRENHVVLASPE---ET 327

  Fly   485 RCKNHNVP---GKLEIHLDDNPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLY- 545
            ||  |..|   |:|.:.||    ..|.|.........|...|...|........:..| .|.|. 
Mouse   328 RC--HFPPKNAGRLLLDLD----YADFGCPVTTTTATVPTIRSTIREPTLSTSSQAPT-WPSLTE 385

  Fly   546 -NVNLPIMVTNLKLTGREVPKPMVRVIVPSLIKANN-----------ELLPPLIATLGNPVLIST 598
             ......:::....|.|..|:|.   ..|:.|..|.           |.|.|       ...|..
Mouse   386 PTTQASTVLSTAPPTMRPAPQPQ---DCPASICLNGGSCRLGARHHWECLCP-------EGFIGL 440

  Fly   599 DLVNPVISPLPPPLLLATTTPPPPLPLPVESEVEKNESTTANPV-PTN-------YTQETTTTTS 655
            ...:||...:.|..:..|..|||.|||.:|            || ||:       |.|..|....
Mouse   441 YCESPVEQGMKPSSIPDTPRPPPLLPLSIE------------PVSPTSLRVKLQRYLQGNTVQLR 493

  Fly   656 TTTTTTTTETSSQVAPIEIITTTAPTTTTTSTTTP-KPNETLPVIV 700
            :...|....:....   .::|...|.:....|.|. :||.|..:.|
Mouse   494 SLRLTYRNLSGPDK---RLVTLRLPASLAEYTVTQLRPNATYSICV 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 100/380 (26%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380
leucine-rich repeat 111..134 CDD:275380 2/6 (33%)
leucine-rich repeat 135..158 CDD:275380 5/33 (15%)
leucine-rich repeat 159..180 CDD:275380 9/32 (28%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 6/21 (29%)
leucine-rich repeat 227..249 CDD:275380 8/21 (38%)
leucine-rich repeat 250..272 CDD:275380 5/21 (24%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 4/17 (24%)
leucine-rich repeat 320..335 CDD:275378 4/14 (29%)
leucine-rich repeat 344..366 CDD:275380 4/21 (19%)
leucine-rich repeat 367..391 CDD:275380 7/23 (30%)
leucine-rich repeat 392..415 CDD:275380 9/23 (39%)
leucine-rich repeat 416..439 CDD:275380 6/22 (27%)
leucine-rich repeat 440..462 CDD:275380 4/21 (19%)
leucine-rich repeat 463..483 CDD:275380 5/26 (19%)
VasnNP_647468.2 LRRNT 24..55 CDD:214470 4/30 (13%)
leucine-rich repeat 35..57 CDD:275380 3/21 (14%)
LRR 1 54..75 8/20 (40%)
leucine-rich repeat 58..78 CDD:275380 8/19 (42%)
LRR <64..>296 CDD:443914 82/280 (29%)
LRR 2 78..99 8/20 (40%)
leucine-rich repeat 79..102 CDD:275380 9/22 (41%)
LRR 3 102..123 6/20 (30%)
leucine-rich repeat 103..126 CDD:275380 8/31 (26%)
LRR 4 126..147 8/25 (32%)
leucine-rich repeat 127..150 CDD:275380 7/27 (26%)
LRR 5 150..170 7/29 (24%)
leucine-rich repeat 151..194 CDD:275380 11/57 (19%)
LRR 6 171..192 5/25 (20%)
LRR 7 194..215 9/31 (29%)
leucine-rich repeat 195..218 CDD:275380 10/37 (27%)
LRR 8 218..239 4/20 (20%)
leucine-rich repeat 219..241 CDD:275380 6/21 (29%)
LRR 9 241..265 9/23 (39%)
leucine-rich repeat 242..266 CDD:275380 9/23 (39%)
LRR 10 266..288 5/21 (24%)
PCC 271..>350 CDD:188093 25/99 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 369..389 3/20 (15%)
EGF 410..441 CDD:394967 7/37 (19%)
fn3 468..537 CDD:394996 17/84 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 608..648
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.