DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and Lingo3

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001013780.2 Gene:Lingo3 / 237403 MGIID:3609246 Length:589 Species:Mus musculus


Alignment Length:606 Identity:134/606 - (22%)
Similarity:212/606 - (34%) Gaps:181/606 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   142 RCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLN-GSLHDLHNLE 205
            ||:..|..:....|.:|          :|.:..| .|....:|.|.||::..|| |.|..|..||
Mouse    27 RCECSASTRTVACGRRR----------LTAIPEG-IPAETRMLELSRNRIRCLNPGDLASLPTLE 80

  Fly   206 SLFINANNITSLDD----ELPDGGQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRSFDRV 266
            .|.:|.|.|..::.    .||   :||:|....|:|:.:|..         |..|.:.|...|  
Mouse    81 ELDLNHNVIAHVEPGAFANLP---RLRVLRLRGNQLKLIPPG---------VFTHLDSLTLLD-- 131

  Fly   267 LRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLN----SSLLPILKLKNANFSF 327
                  |||     |:|..|....|.....::.|::|.|.:..::    :.||.:.:|.....:.
Mouse   132 ------LSE-----NKLVILLDFSFQDLRSLQRLEVGDNDLVFISRRAFAGLLGLAELTLERCNL 185

  Fly   328 NDIEEFSMAELHGLRSLKTLQLSSNRIQ----RLLPD----------------PRGVQELMLVNL 372
            ..:...|:..|.||.:|:...|:...::    :.||.                |..::.|.|.:|
Mouse   186 TSLSPESLGHLRGLGALRLRHLAIAALEDQNFQKLPGLSHLEIDNWPLLEEVAPGSLRGLNLTSL 250

  Fly   373 DLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTL 436
            .:.:..|.:: ..||....:|..|||:.|.:..:..|.|..::||..|.|.|..||.::|     
Mouse   251 SITHTNITAVPAAALRQQAHLTCLNLSHNPISMVPRGSFRDLVRLRELHLAGALLAVIEP----- 310

  Fly   437 LPSLKILKVAYNNITKLEQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDD 501
                              |.|.||..:...||::|.:||:..    ||   .|:|.....:.:|.
Mouse   311 ------------------QAFVGLRQIRLLNLSDNLLSTLEE----NT---FHSVNTLETLRVDG 350

  Fly   502 NPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLPIMVTNLKLTG---REV 563
            ||:.||      |||:.:.:.|                 ..:.::..||...|..::.|   ..:
Mouse   351 NPLACD------CRLLWIVQRR-----------------KTLNFDGRLPACATPAEVRGDALHNL 392

  Fly   564 P-----------KPMVRVIVPSLIKANNELLPPLIATLGNPVLISTDLVNPVISPLPPPLLLATT 617
            |           ||.:|          ...|..:.||.|:.|..   |......|.|   .:|..
Mouse   393 PDSVLFEYFVCRKPKIR----------ERRLQHVTATEGDDVRF---LCRAEGEPAP---TVAWV 441

  Fly   618 TPPPPLPLPVESEVEKNESTTAN--------PVPTNYTQETTTTTSTTTTTTTTETSSQVAPIEI 674
            ||             ::.|.||.        |..|....:|....|.|.|...:.....      
Mouse   442 TP-------------QHHSVTAASRGRARVLPGGTLTIADTRPQDSGTYTCVASNAGGN------ 487

  Fly   675 ITTTAPTTTTTSTTTPKPNET 695
                 .|...|.|..|..|.|
Mouse   488 -----DTYFATLTVQPAANRT 503

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 86/363 (24%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380
leucine-rich repeat 111..134 CDD:275380
leucine-rich repeat 135..158 CDD:275380 4/15 (27%)
leucine-rich repeat 159..180 CDD:275380 3/20 (15%)
leucine-rich repeat 181..203 CDD:275380 9/22 (41%)
leucine-rich repeat 204..226 CDD:275380 8/25 (32%)
leucine-rich repeat 227..249 CDD:275380 6/21 (29%)
leucine-rich repeat 250..272 CDD:275380 4/21 (19%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
leucine-rich repeat 297..315 CDD:275380 3/21 (14%)
leucine-rich repeat 320..335 CDD:275378 1/14 (7%)
leucine-rich repeat 344..366 CDD:275380 5/41 (12%)
leucine-rich repeat 367..391 CDD:275380 6/24 (25%)
leucine-rich repeat 392..415 CDD:275380 7/22 (32%)
leucine-rich repeat 416..439 CDD:275380 7/22 (32%)
leucine-rich repeat 440..462 CDD:275380 4/21 (19%)
leucine-rich repeat 463..483 CDD:275380 5/19 (26%)
Lingo3NP_001013780.2 LRRNT 23..55 CDD:214470 8/38 (21%)
leucine-rich repeat 34..53 CDD:275380 4/29 (14%)
LRR 1 54..75 8/20 (40%)
leucine-rich repeat 55..78 CDD:275380 9/22 (41%)
LRR <56..>349 CDD:443914 83/347 (24%)
LRR 2 78..99 6/20 (30%)
leucine-rich repeat 79..102 CDD:275380 8/25 (32%)
LRR 3 102..123 7/29 (24%)
leucine-rich repeat 103..150 CDD:275380 17/68 (25%)
LRR 4 126..147 9/33 (27%)
LRR 5 150..171 3/20 (15%)
leucine-rich repeat 151..174 CDD:275380 4/22 (18%)
LRR 6 174..195 2/20 (10%)
leucine-rich repeat 175..198 CDD:275380 3/22 (14%)
leucine-rich repeat 199..222 CDD:275380 4/22 (18%)
LRR 7 206..227 3/20 (15%)
leucine-rich repeat 223..246 CDD:275380 1/22 (5%)
LRR 8 246..267 5/20 (25%)
leucine-rich repeat 247..270 CDD:275380 5/22 (23%)
LRR 9 270..291 7/20 (35%)
leucine-rich repeat 271..292 CDD:275380 7/20 (35%)
LRR 10 294..315 10/43 (23%)
leucine-rich repeat 295..318 CDD:275380 11/45 (24%)
LRR 11 318..339 7/27 (26%)
leucine-rich repeat 321..342 CDD:275380 9/27 (33%)
PCC 331..>405 CDD:188093 19/103 (18%)
Ig 407..496 CDD:472250 23/128 (18%)
Ig strand B 424..428 CDD:409353 1/6 (17%)
Ig strand C 437..441 CDD:409353 1/3 (33%)
Ig strand E 462..466 CDD:409353 1/3 (33%)
Ig strand F 476..481 CDD:409353 2/4 (50%)
Ig strand G 489..492 CDD:409353 1/2 (50%)
Blue background indicates that the domain is not in the aligned region.

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