DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and Nyx

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_775591.1 Gene:Nyx / 236690 MGIID:2448607 Length:476 Species:Mus musculus


Alignment Length:544 Identity:117/544 - (21%)
Similarity:178/544 - (32%) Gaps:185/544 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 CKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLILHLGRNQLESLN----GSLHDLHN 203
            |.:|.    |..|:|||..              .||.....:.|.||.|..|.    |:|..|. 
Mouse    39 CSVRC----DRAGLQRVPQ--------------EFPCEAASIDLDRNGLRILGERAFGTLPSLR- 84

  Fly   204 LESLFINANNITSLDDELPDGGQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRSFDRVLR 268
                                    ||.:.|||.....|....|:..|.       :||       
Mouse    85 ------------------------RLSLRHNNLSFITPGAFKGLPRLA-------ELR------- 111

  Fly   269 NAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNSSL---LPILK----------- 319
                    :|.|.||.||....||:..::..|.:....:.|:...|   ||.|:           
Mouse   112 --------LAHNGELRYLHVRTFAALGRLRRLDLAACRLFSVPERLLAELPALRELTAFDNLFRR 168

  Fly   320 ----------LKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQELMLVNLDL 374
                      |.:|:|..:.||..:...|.|:|.|::|.|.:||:       |.|..        
Mouse   169 VPGALRGLANLTHAHFERSRIEAVASGSLLGMRRLRSLSLQANRV-------RAVHA-------- 218

  Fly   375 DNNRIDSLNGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPS 439
                     ||....|.|..|.|..|.|..|....|.|:.||..|:|.||.|..:.....:.|..
Mouse   219 ---------GAFGDCGALEDLLLNDNLLATLPAAAFRGLRRLRTLNLGGNALGSVARAWFSDLAE 274

  Fly   440 LKILKVAYNNITKLEQD-FKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKL--EIHLDD 501
            |::|.:..|:||.:|:. |:.|..|...:|..|:::.:|.....         ||..  .:.|..
Mouse   275 LELLYLDRNSITFVEEGAFQNLSGLLALHLNGNRLTVLSWAAFQ---------PGFFLGRLFLFR 330

  Fly   502 NPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNLPIMVTNLKLTGREVPKP 566
            ||..||      |:|..:::.                                 ::.:||...  
Mouse   331 NPWRCD------CQLEWLRDW---------------------------------MEGSGRVAD-- 354

  Fly   567 MVRVIVPSLIKANNELLPPLIATLGNPVLISTDLVNPVISPLPPPLLLATTTPPPPLPLPVESEV 631
             |....|..: |..:|...:.....:.:.:..|.:|            .||:.|.|.|.||.:.|
Mouse   355 -VACASPGSV-AGQDLSQVVFERSSDGLCVDPDELN------------FTTSSPGPSPEPVATTV 405

  Fly   632 EKNESTTANPV-PTNYTQETTTTT 654
            .:..|..:..: |....:|...||
Mouse   406 SRFSSLLSKLLAPRAPVEEVANTT 429

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 86/361 (24%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380
leucine-rich repeat 111..134 CDD:275380
leucine-rich repeat 135..158 CDD:275380 4/14 (29%)
leucine-rich repeat 159..180 CDD:275380 3/20 (15%)
leucine-rich repeat 181..203 CDD:275380 8/25 (32%)
leucine-rich repeat 204..226 CDD:275380 0/21 (0%)
leucine-rich repeat 227..249 CDD:275380 7/21 (33%)
leucine-rich repeat 250..272 CDD:275380 3/21 (14%)
leucine-rich repeat 273..296 CDD:275380 8/22 (36%)
leucine-rich repeat 297..315 CDD:275380 3/20 (15%)
leucine-rich repeat 320..335 CDD:275378 5/14 (36%)
leucine-rich repeat 344..366 CDD:275380 7/21 (33%)
leucine-rich repeat 367..391 CDD:275380 2/23 (9%)
leucine-rich repeat 392..415 CDD:275380 8/22 (36%)
leucine-rich repeat 416..439 CDD:275380 7/22 (32%)
leucine-rich repeat 440..462 CDD:275380 8/22 (36%)
leucine-rich repeat 463..483 CDD:275380 4/19 (21%)
NyxNP_775591.1 LRRNT 25..56 CDD:396168 7/34 (21%)
LRR 1 58..79 5/20 (25%)
leucine-rich repeat 63..82 CDD:275380 7/18 (39%)
LRR <69..>326 CDD:443914 77/336 (23%)
LRR 2 82..103 7/45 (16%)
leucine-rich repeat 83..106 CDD:275380 8/47 (17%)
LRR 3 106..128 10/43 (23%)
leucine-rich repeat 107..131 CDD:275380 11/45 (24%)
LRR 4 131..154 3/22 (14%)
leucine-rich repeat 132..155 CDD:275380 4/22 (18%)
LRR 5 155..177 1/21 (5%)
leucine-rich repeat 156..178 CDD:275380 1/21 (5%)
LRR 6 178..199 6/20 (30%)
leucine-rich repeat 179..202 CDD:275380 7/22 (32%)
LRR 7 202..223 9/44 (20%)
leucine-rich repeat 203..226 CDD:275380 9/46 (20%)
LRR 8 226..247 7/20 (35%)
leucine-rich repeat 227..250 CDD:275380 8/22 (36%)
LRR 9 250..271 7/20 (35%)
leucine-rich repeat 251..274 CDD:275380 7/22 (32%)
LRR 10 274..295 7/20 (35%)
leucine-rich repeat 275..296 CDD:275380 7/20 (35%)
LRR 11 298..319 4/29 (14%)
leucine-rich repeat 299..322 CDD:275378 6/31 (19%)
leucine-rich repeat 323..335 CDD:275378 3/11 (27%)
LRRCT 331..>366 CDD:214507 11/77 (14%)
Blue background indicates that the domain is not in the aligned region.

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