DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and Lrrc3c

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001182473.1 Gene:Lrrc3c / 192852 MGIID:2684858 Length:255 Species:Mus musculus


Alignment Length:184 Identity:42/184 - (22%)
Similarity:64/184 - (34%) Gaps:67/184 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   335 MAELHGLRSLKTLQLSSNRIQRLLP-DPRGVQELMLVNLDLDNNRIDSL-NGALAGLGNLRILNL 397
            :||..|.::.:..:...:.:...:| |.|        .|.||.|::.|: .||...|..|..|:|
Mouse    33 VAEEAGEQTFRCSRAGLSAVPNGIPNDTR--------KLYLDANQLASVPAGAFQHLPALEELDL 89

  Fly   398 AGNRLEHLQVGDFDGMI-RLDILDLTGNQLAELKPLEMTLLPSLKILKVAYNNITKLEQDFKGLP 461
            :.|.|.||....|.|:. .|..|||:.||||                               .:|
Mouse    90 SHNALVHLSGAAFQGLEGTLRHLDLSANQLA-------------------------------SVP 123

  Fly   462 VLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDDNPIMCDVGLNELCR 515
            |.....|                         :::::|..||..||..|.|:.|
Mouse   124 VAAFVGL-------------------------QIQVNLSANPWRCDCALQEVLR 152

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 34/143 (24%)
leucine-rich repeat 65..86 CDD:275380
leucine-rich repeat 87..110 CDD:275380
leucine-rich repeat 111..134 CDD:275380
leucine-rich repeat 135..158 CDD:275380
leucine-rich repeat 159..180 CDD:275380
leucine-rich repeat 181..203 CDD:275380
leucine-rich repeat 204..226 CDD:275380
leucine-rich repeat 227..249 CDD:275380
leucine-rich repeat 250..272 CDD:275380
leucine-rich repeat 273..296 CDD:275380
leucine-rich repeat 297..315 CDD:275380
leucine-rich repeat 320..335 CDD:275378 42/184 (23%)
leucine-rich repeat 344..366 CDD:275380 3/22 (14%)
leucine-rich repeat 367..391 CDD:275380 8/24 (33%)
leucine-rich repeat 392..415 CDD:275380 9/23 (39%)
leucine-rich repeat 416..439 CDD:275380 8/22 (36%)
leucine-rich repeat 440..462 CDD:275380 0/21 (0%)
leucine-rich repeat 463..483 CDD:275380 1/19 (5%)
Lrrc3cNP_001182473.1 leucine-rich repeat 40..59 CDD:275378 1/18 (6%)
leucine-rich repeat 60..83 CDD:275378 9/30 (30%)
LRR_8 61..119 CDD:404697 23/65 (35%)
leucine-rich repeat 84..108 CDD:275378 9/23 (39%)
leucine-rich repeat 109..131 CDD:275378 11/77 (14%)
leucine-rich repeat 132..143 CDD:275378 3/10 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.