DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and Igfals

DIOPT Version :9

Sequence 1:NP_001261524.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001351825.1 Gene:Igfals / 16005 MGIID:107973 Length:638 Species:Mus musculus


Alignment Length:603 Identity:159/603 - (26%)
Similarity:252/603 - (41%) Gaps:93/603 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QCSVRPEISPCTCETGKAWNHVELSCEKLESFNAVVDSL----------ANKLNAD--------T 61
            ||.|     .|||......:.:.:.|.. .:...:.||:          .|.|::.        :
Mouse    75 QCPV-----TCTCSYDDYTDELSVFCSS-RNLTQLPDSIPVSTRALWLDGNNLSSIPSAAFQNLS 133

  Fly    62 NID-LKITHSQLDDLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDNDLDEIP 125
            ::| |.:..|.|..||.::...:. |||.|.::.|.|:||....||...::..||:|:|.|..:.
Mouse   134 SLDFLNLQGSWLRSLEPQALLGLQ-NLYHLHLERNLLRSLAAGLFRHTPSLASLSLGNNLLGRLE 197

  Fly   126 KHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFPKSLLI------- 183
            :.....:..|..|::|...:..:....|:|:..:..|:|..|.:|.|.     .:||.       
Mouse   198 EGLFRGLSHLWDLNLGWNSLVVLPDTVFQGLGNLHELVLAGNKLTYLQ-----PALLCGLGELRE 257

  Fly   184 LHLGRNQLESL--NGSLHDLHNLESLFINANNITSLDDELPDGGQ-LRLLMAHNNR----LERLP 241
            |.|.||.|.|:  |..:| |..|:.|:::.|.||::......|.: ||.|...:||    ||...
Mouse   258 LDLSRNALRSVKANVFIH-LPRLQKLYLDRNLITAVAPRAFLGMKALRWLDLSHNRVAGLLEDTF 321

  Fly   242 ANMAGMHSLETVHIHCNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNH 306
            ..:.|:|.|...|.....||  .|..::...|.|:...:|.:..|.:..|....::|.|.:..|.
Mouse   322 PGLLGLHVLRLAHNAITSLR--PRTFKDLHFLEELQLGHNRIRQLGEKTFEGLGQLEVLTLNDNQ 384

  Fly   307 IKSLN-SSLLPILKLKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRL-LPDPRGVQELML 369
            |..:. .:...:..:...|.|.|.:.........||..|.:|.|..:.:.|: |....|:..|. 
Mouse   385 IHEVKVGAFFGLFNVAVMNLSGNCLRSLPEHVFQGLGRLHSLHLEHSCLGRIRLHTFAGLSGLR- 448

  Fly   370 VNLDLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELK--- 430
             .|.|.:|.|.|: ..:||||..|..|:|..|:|.||....|.|:.:|:.|.|:.|||..|.   
Mouse   449 -RLFLRDNSISSIEEQSLAGLSELLELDLTANQLTHLPRQLFQGLGQLEYLLLSNNQLTMLSEDV 512

  Fly   431 --PLEMTLLPSLKILKVAYNNI-TKLEQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVP 492
              ||:....     |.:::|.: |..|..|..|..|...||.||.:.|...:            |
Mouse   513 LGPLQRAFW-----LDLSHNRLETPAEGLFSSLGRLRYLNLRNNSLQTFVPQ------------P 560

  Fly   493 GKLEIHLDDNPIMCDVGLNELCRLMAVQEARIRGR---SQCFEND-QEVCTVLPMLYNVNL---- 549
            |...:.||.||..|...|..| |..|:|...:..|   :.|..:| |.|.|     || |:    
Mouse   561 GLERLWLDANPWDCSCPLKAL-RDFALQNPGVVPRFVQTVCEGDDCQPVYT-----YN-NITCAG 618

  Fly   550 PIMVTNLKLTGREVPKPM 567
            |..|:.|.|  |::.:.:
Mouse   619 PANVSGLDL--RDISETL 634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_001261524.1 leucine-rich repeat 65..86 CDD:275380 5/20 (25%)
LRR_8 86..145 CDD:290566 18/58 (31%)
leucine-rich repeat 87..110 CDD:275380 9/22 (41%)
leucine-rich repeat 111..134 CDD:275380 5/22 (23%)
leucine-rich repeat 135..158 CDD:275380 5/22 (23%)
LRR_8 158..214 CDD:290566 19/64 (30%)
leucine-rich repeat 159..180 CDD:275380 5/20 (25%)
leucine-rich repeat 181..203 CDD:275380 11/30 (37%)
leucine-rich repeat 204..226 CDD:275380 6/21 (29%)
LRR_RI 226..451 CDD:238064 64/238 (27%)
leucine-rich repeat 227..249 CDD:275380 8/25 (32%)
leucine-rich repeat 250..272 CDD:275380 5/21 (24%)
leucine-rich repeat 273..296 CDD:275380 5/22 (23%)
leucine-rich repeat 297..315 CDD:275380 4/18 (22%)
LRR_8 319..402 CDD:290566 25/84 (30%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 6/22 (27%)
leucine-rich repeat 367..391 CDD:275380 10/24 (42%)
LRR_8 369..426 CDD:290566 22/57 (39%)
leucine-rich repeat 392..415 CDD:275380 9/22 (41%)
leucine-rich repeat 416..439 CDD:275380 9/27 (33%)
LRR_8 438..>479 CDD:290566 12/41 (29%)
leucine-rich repeat 440..462 CDD:275380 6/22 (27%)
leucine-rich repeat 463..483 CDD:275380 6/19 (32%)
IgfalsNP_001351825.1 LRRNT 75..113 CDD:214470 9/43 (21%)
leucine-rich repeat 92..110 CDD:275380 3/18 (17%)
PLN00113 96..>558 CDD:331614 126/478 (26%)
leucine-rich repeat 114..134 CDD:275380 2/19 (11%)
leucine-rich repeat 135..158 CDD:275380 6/23 (26%)
leucine-rich repeat 159..182 CDD:275380 9/22 (41%)
leucine-rich repeat 183..206 CDD:275380 5/22 (23%)
leucine-rich repeat 207..230 CDD:275380 5/22 (23%)
leucine-rich repeat 231..254 CDD:275380 7/27 (26%)
leucine-rich repeat 255..278 CDD:275380 9/23 (39%)
leucine-rich repeat 279..302 CDD:275380 6/22 (27%)
leucine-rich repeat 303..326 CDD:275380 7/22 (32%)
leucine-rich repeat 327..350 CDD:275380 6/24 (25%)
leucine-rich repeat 351..374 CDD:275380 5/22 (23%)
leucine-rich repeat 375..396 CDD:275380 4/20 (20%)
leucine-rich repeat 423..446 CDD:275380 6/22 (27%)
leucine-rich repeat 447..470 CDD:275380 10/24 (42%)
leucine-rich repeat 471..494 CDD:275380 9/22 (41%)
leucine-rich repeat 495..516 CDD:275380 7/20 (35%)
leucine-rich repeat 519..542 CDD:275380 6/27 (22%)
leucine-rich repeat 543..561 CDD:275380 6/29 (21%)
TPKR_C2 570..613 CDD:326558 16/49 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.