DRSC/TRiP Functional Genomics Resources

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Protein Alignment ltl and Chadl

DIOPT Version :10

Sequence 1:NP_729265.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:NP_001419062.1 Gene:Chadl / 100910434 RGDID:6504353 Length:737 Species:Rattus norvegicus


Alignment Length:728 Identity:152/728 - (20%)
Similarity:246/728 - (33%) Gaps:243/728 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 FHLASLQCSVRPEISPCTCETGKAWNHVELSCEKLESFNAVVDSLANKLNADTNIDLKITHSQLD 73
            :::|:.:|       |.||....:..||....:.|......:..|..:|:...|: ||:      
  Rat    20 WNVAAQRC-------PQTCVCDNSRRHVTCQHQNLTEVPDTIPELTQRLDLQGNM-LKV------ 70

  Fly    74 DLEMRSFTDMNFNLYKLRMQWNSLKSLPEVPFRGLSNVTYLSIGDNDLDEIPKHALSHMPSLLTL 138
             :...:|.|:.: |..|.:|...::.:.|..||||..:.:|::..|.|..:|:.||..:.||..|
  Rat    71 -IPPAAFQDLPY-LTHLDLQHCQVEQVAEGAFRGLGRLLFLNLASNRLSSLPQEALDGLGSLRRL 133

  Fly   139 DIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSF--------------------PKSL-- 181
            ::.|..:..::...|..:..:..|.|..|.:..|...:|                    |::|  
  Rat   134 ELERNMLEELRPGTFGALGSLATLNLAHNALVYLPAMAFQGLMRTRWLQLSHNALSVLAPEALAG 198

  Fly   182 ------LILHLGRNQLESLNG-SLHDLHNLESLFINANNITSLDDE----LPDGGQLRLLMAHNN 235
                  |.||  .|:|::|.| :|....:|..|.:..|.:|...:|    ||.   ||.|...:.
  Rat   199 LPVLRRLSLH--HNELQALPGAALSQARSLARLELGHNPLTYTGEEDGLALPG---LRELALDHG 258

  Fly   236 RLERL-PANMAGMHSLETVHIHCNQLRSFDRVLRNAVNLSEVMADNNE----------LEYL--- 286
            .|:.| |...|....|.|:.:..|||.:.. .|:....|..:....|.          ||:|   
  Rat   259 SLQALGPRAFAHCPRLHTLDLRGNQLTTLP-PLQVPGQLRRLRLQGNPLWCACHARPLLEWLVRA 322

  Fly   287 ---------------------------------AQDE---------------------------- 290
                                             |:||                            
  Rat   323 RVRSDGACRGPRRLRGETLDTLRPSDLRCPGDAAEDEDEDRPAGPRSPPRSLHEEARWATPCPPA 387

  Fly   291 --------FASC-------------SKVETLQMGCNHIKSLNSSLLPILK--------------- 319
                    .::|             :..:.|.:..||..|:..:..|.|:               
  Rat   388 CVCVGETRHSACDGRGLQAVPRGFPNDTQLLDLRRNHFPSVPRAAFPGLRHLVSLHLQHCGIAEL 452

  Fly   320 ----------LKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRL-------LPDPRGVQEL 367
                      |.....|.|.:...|.|.|.|..:|..|.|..||..|:       ||        
  Rat   453 EPGALAGLDGLVYLYLSNNQLSGLSAAALEGAPNLGYLYLEHNRFLRIPGAALRALP-------- 509

  Fly   368 MLVNLDLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKP 431
            .|.:|.|.:|.:|.| .|.|||...||.|.|:||.:..:..|.......|:.|.|..|||.::..
  Rat   510 RLFSLHLQDNAVDRLAPGDLAGARALRGLYLSGNHITQVSPGALGPARELEKLHLDRNQLRQVPT 574

  Fly   432 LEMTLLPSLKILKVAYN----------------------NITKLEQ----DFKGLPVLCQA-NLT 469
            ..:..||:||.|:::.|                      |.:.|||    .|.||....|. .|.
  Rat   575 GALEGLPALKELQLSRNPFRALHDGAFQPVGRSLQQLFLNSSDLEQISPRAFSGLGKGLQGLYLQ 639

  Fly   470 NNQISTISSELVTNTRCKNHNVPGKLEIHLDDNPIMCDVGLNELCRLM---------------AV 519
            .||:.::.:.:.         :.|...|.|..||..||..|..|.|.:               :|
  Rat   640 QNQLQSLPAPMW---------LSGLELIDLSGNPFHCDCQLLPLHRWLTGLNLRVGATCATPPSV 695

  Fly   520 QEARIRGRSQCFE 532
            :..:::..:..||
  Rat   696 RGQKVKAAASVFE 708

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_729265.1 LRR 65..476 CDD:443914 128/599 (21%)
leucine-rich repeat 65..86 CDD:275380 4/20 (20%)
leucine-rich repeat 87..110 CDD:275380 8/22 (36%)
leucine-rich repeat 111..134 CDD:275380 6/22 (27%)
leucine-rich repeat 135..158 CDD:275380 4/22 (18%)
leucine-rich repeat 159..180 CDD:275380 6/40 (15%)
leucine-rich repeat 181..203 CDD:275380 9/30 (30%)
leucine-rich repeat 204..226 CDD:275380 7/25 (28%)
leucine-rich repeat 227..249 CDD:275380 7/22 (32%)
leucine-rich repeat 250..272 CDD:275380 6/21 (29%)
leucine-rich repeat 273..296 CDD:275380 9/117 (8%)
leucine-rich repeat 297..315 CDD:275380 4/17 (24%)
leucine-rich repeat 320..335 CDD:275378 3/14 (21%)
leucine-rich repeat 344..366 CDD:275380 8/28 (29%)
leucine-rich repeat 367..391 CDD:275380 10/24 (42%)
leucine-rich repeat 392..415 CDD:275380 7/22 (32%)
leucine-rich repeat 416..439 CDD:275380 7/22 (32%)
leucine-rich repeat 440..462 CDD:275380 11/47 (23%)
leucine-rich repeat 463..483 CDD:275380 4/20 (20%)
ChadlNP_001419062.1 LRRNT 27..59 CDD:214470 8/38 (21%)
leucine-rich repeat 38..56 CDD:275380 3/17 (18%)
leucine-rich repeat 58..81 CDD:275380 6/30 (20%)
LRR 61..>306 CDD:443914 62/259 (24%)
leucine-rich repeat 82..105 CDD:275380 8/22 (36%)
leucine-rich repeat 106..129 CDD:275380 6/22 (27%)
leucine-rich repeat 130..153 CDD:275380 4/22 (18%)
leucine-rich repeat 154..177 CDD:275380 5/22 (23%)
leucine-rich repeat 178..201 CDD:275380 2/22 (9%)
leucine-rich repeat 202..225 CDD:275380 8/24 (33%)
leucine-rich repeat 226..249 CDD:275380 6/22 (27%)
leucine-rich repeat 250..273 CDD:275380 7/22 (32%)
leucine-rich repeat 296..335 CDD:275380 5/38 (13%)
LRRNT 383..417 CDD:214470 1/33 (3%)
leucine-rich repeat 415..438 CDD:275380 6/22 (27%)
LRR <418..>638 CDD:443914 58/227 (26%)
leucine-rich repeat 439..462 CDD:275380 0/22 (0%)
leucine-rich repeat 463..486 CDD:275380 7/22 (32%)
leucine-rich repeat 487..510 CDD:275380 8/30 (27%)
leucine-rich repeat 511..534 CDD:275380 10/22 (45%)
leucine-rich repeat 535..558 CDD:275380 7/22 (32%)
leucine-rich repeat 559..582 CDD:275380 7/22 (32%)
leucine-rich repeat 583..607 CDD:275380 4/23 (17%)
leucine-rich repeat 608..631 CDD:275380 7/22 (32%)
leucine-rich repeat 633..655 CDD:275380 4/30 (13%)
leucine-rich repeat 656..667 CDD:275378 4/10 (40%)
LRRCT 663..711 CDD:214507 10/46 (22%)

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