DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and igfals

DIOPT Version :9

Sequence 1:NP_001261524.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:XP_002940278.2 Gene:igfals / 100489984 XenbaseID:XB-GENE-1008441 Length:601 Species:Xenopus tropicalis


Alignment Length:650 Identity:151/650 - (23%)
Similarity:256/650 - (39%) Gaps:112/650 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LVYTVFHLASLQCSVR-PEIS----PCTCETGKAWNHVELSCEKLESFNAVVDSLANKLNADTNI 63
            ||:.:....||:...| ||.:    ||.|           |.:..|.::....|.          
 Frog    13 LVWNILVCGSLEAEPRSPEPAPCPPPCVC-----------SYDYSEEYSVFCSSR---------- 56

  Fly    64 DLKITHSQLDDLEMRSFTDMNFNLYKL--------RMQW---NSLKSLPEVPFRGLSNVTYLSIG 117
                                  ||.::        |..|   |:|.::....||.||::.:|::.
 Frog    57 ----------------------NLTRVPEPPPPAARSLWLDGNNLTTVQAGAFRNLSHLDFLNLQ 99

  Fly   118 DNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRGIQRVTNLILVSNIITRLDRGSFP--KS 180
            .:.:..:.:.||..:.:|..|.:.|..|:::....|...|.:.:|.|.:|.:|:::.|.|.  .:
 Frog   100 SSQVASLEQQALHGLKALAHLHLERNMIKSLAPSTFTHTQNLVSLTLNNNFLTKIEDGLFSGLSN 164

  Fly   181 LLILHLGRNQLESLNGSL-HDLHNLESLFINANNITSLDDEL-PDGGQLRLLMAHNNRLERLPAN 243
            |..|:||.|.|..|...: |||.||..|.:..|.:..|...| ...|:|:.|....|.|:.:.||
 Frog   165 LWYLNLGWNLLVVLPDMVFHDLLNLRELVLAGNRLVYLQPSLFLSLGELKELDLSGNSLKGIKAN 229

  Fly   244 M----AGMHSLETVHIHCNQLRSFDRVLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGC 304
            :    ...|.|...|.|.:.:.  .|......||..:...:|.|..|.:|.|.....:..|::..
 Frog   230 VFTRQQKTHKLYLNHNHISTVA--PRAFSGMKNLRWLDLSHNRLTALYEDTFFGLPSLNVLRLSN 292

  Fly   305 NHIKSLNSSLLPILK-LKNANFSFNDIEEFSMAELHGLRSLKTLQLSSNRIQRLLPDP-RGVQEL 367
            |.:.||...:...|: |...|...|.|:........||..|:.|.|:.|.:|.:.|.. .|:..:
 Frog   293 NSLTSLRPRIFKDLQFLVELNLGQNKIKILLERTFEGLAQLELLSLNHNNVQEIRPGSFLGLLNV 357

  Fly   368 MLVNLDLDNNRIDSL-NGALAGLGNLRILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKP 431
            .::|  |..|.:.|| .....|||.|..|::..:.|.|::...|.|:..:..|.|..|::..::.
 Frog   358 AVIN--LSGNCLKSLAEHCFKGLGKLHSLHMESSCLSHIKPQMFAGLSSIRRLFLQNNEIVAIED 420

  Fly   432 LEMTLLPSLKILKVAYNNITKL-EQDFKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKL 495
            ...|.|..|..|.:..|.:|.| .:.|.||..|....|::|||.|||.|:.:..:        :|
 Frog   421 HSFTDLHGLLELDLRSNKLTHLTTRSFTGLKNLSYLLLSSNQILTISPEVFSPVQ--------QL 477

  Fly   496 E-IHLDDNPIMCDVGLNELCRLMAVQEARIRGRSQCFENDQEVCTVLPMLYNVNL---PIMVTNL 556
            : :.|.||.:.   .|.|...|.......:..::.|.:.           .:||.   |..:..|
 Frog   478 QWLDLSDNQLK---ALTEDIFLPLSSLRYLSLKNNCLKT-----------ISVNFLIPPPTMQQL 528

  Fly   557 KLTGREVPKPMVRVIVPSLIKANNELLPPLIATLGNPVLISTDLVNPVISPLPPPLLLATTTPPP 621
            .|.|.:.........:..|...|:.::|.|:.::..    ..|..:||.:.:       |...||
 Frog   529 WLNGNQWDCGCALKGLRDLALRNSTIVPHLVQSISE----GDDTASPVYNNI-------TCASPP 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_001261524.1 leucine-rich repeat 65..86 CDD:275380 0/20 (0%)
LRR_8 86..145 CDD:290566 16/69 (23%)
leucine-rich repeat 87..110 CDD:275380 8/33 (24%)
leucine-rich repeat 111..134 CDD:275380 3/22 (14%)
leucine-rich repeat 135..158 CDD:275380 5/22 (23%)
LRR_8 158..214 CDD:290566 20/58 (34%)
leucine-rich repeat 159..180 CDD:275380 6/22 (27%)
leucine-rich repeat 181..203 CDD:275380 10/22 (45%)
leucine-rich repeat 204..226 CDD:275380 5/22 (23%)
LRR_RI 226..451 CDD:238064 58/231 (25%)
leucine-rich repeat 227..249 CDD:275380 6/25 (24%)
leucine-rich repeat 250..272 CDD:275380 4/21 (19%)
leucine-rich repeat 273..296 CDD:275380 6/22 (27%)
leucine-rich repeat 297..315 CDD:275380 4/17 (24%)
LRR_8 319..402 CDD:290566 23/85 (27%)
leucine-rich repeat 320..335 CDD:275378 4/14 (29%)
leucine-rich repeat 344..366 CDD:275380 7/22 (32%)
leucine-rich repeat 367..391 CDD:275380 7/24 (29%)
LRR_8 369..426 CDD:290566 17/57 (30%)
leucine-rich repeat 392..415 CDD:275380 6/22 (27%)
leucine-rich repeat 416..439 CDD:275380 5/22 (23%)
LRR_8 438..>479 CDD:290566 16/41 (39%)
leucine-rich repeat 440..462 CDD:275380 8/22 (36%)
leucine-rich repeat 463..483 CDD:275380 9/19 (47%)
igfalsXP_002940278.2 leucine-rich repeat 69..92 CDD:275380 7/22 (32%)
PLN00113 71..>534 CDD:215061 125/488 (26%)
leucine-rich repeat 93..116 CDD:275380 3/22 (14%)
leucine-rich repeat 117..140 CDD:275380 5/22 (23%)
leucine-rich repeat 141..164 CDD:275380 6/22 (27%)
leucine-rich repeat 165..188 CDD:275380 10/22 (45%)
leucine-rich repeat 189..212 CDD:275380 5/22 (23%)
leucine-rich repeat 213..236 CDD:275380 6/22 (27%)
leucine-rich repeat 237..260 CDD:275380 5/24 (21%)
leucine-rich repeat 261..284 CDD:275380 6/22 (27%)
leucine-rich repeat 285..308 CDD:275380 5/22 (23%)
leucine-rich repeat 309..332 CDD:275380 6/22 (27%)
leucine-rich repeat 333..354 CDD:275380 6/20 (30%)
leucine-rich repeat 357..380 CDD:275380 7/24 (29%)
leucine-rich repeat 381..404 CDD:275380 6/22 (27%)
leucine-rich repeat 405..428 CDD:275380 5/22 (23%)
leucine-rich repeat 429..450 CDD:275380 6/20 (30%)
leucine-rich repeat 453..472 CDD:275380 9/18 (50%)
leucine-rich repeat 477..500 CDD:275380 7/25 (28%)
leucine-rich repeat 525..537 CDD:275378 3/11 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24373
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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