DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ltl and si:dkey-182i3.11

DIOPT Version :9

Sequence 1:NP_001261524.1 Gene:ltl / 38845 FlyBaseID:FBgn0268063 Length:817 Species:Drosophila melanogaster
Sequence 2:XP_021322095.1 Gene:si:dkey-182i3.11 / 100334238 ZFINID:ZDB-GENE-121214-258 Length:710 Species:Danio rerio


Alignment Length:673 Identity:166/673 - (24%)
Similarity:269/673 - (39%) Gaps:140/673 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    25 CTC---ETGKAWN--------------HVELSCEKL-----ESFN--AVVDSLANKLNADTNIDL 65
            |:|   :....||              |...:..|:     |:|:  .|:|...|..|...|.:.
Zfish    59 CSCVDVDIVTCWNTNLLEFPPLPNGTKHFYATRNKIQALPNETFHELRVLDLTKNVFNLSLNTNW 123

  Fly    66 K----ITHSQLDDLEMRSFTDMNF----NLYKLRMQWNSLKSLPEVPFRGLSN------------ 110
            :    :||..|....:|:.|...|    ||..|.:..|::||||::...||.|            
Zfish   124 QSVRGLTHLHLGGNRLRALTPRQFEGLLNLQVLDLSNNAIKSLPQMFLYGLINLQTLNLNINQIL 188

  Fly   111 ------------VTYLSIGDNDLDEIPKHALSHMPSLLTLDIGRCKIRAVQQEDFRG-------- 155
                        :|.|.:.||.:|.|..:...:...|..|.:.:.|:::|....|:|        
Zfish   189 SLSYGVLEGPLALTDLQLRDNMIDMIEMNVFENCTYLAKLYLSKNKLKSVGNGSFKGATGLNHLD 253

  Fly   156 ----------------IQRVTNLILVSNIITRLDRGSFPKSLLILH--LGRNQLESL-NGSLHDL 201
                            ...:|:|.|..|.||.:....|.:.|.:.|  |..|.|.|: |||...|
Zfish   254 LGLNGLAGIPTIVLQETSNLTSLYLQKNDITSIPDNVFSEILSLKHLDLSYNGLVSISNGSFRSL 318

  Fly   202 HNLESLFINANNITSLDDEL-PDGGQLRLLMAHNNRLERLPANMAGMHSLETVHIHCNQLRSFDR 265
            ..|..|.::.|.:.:|...: .|.|:|..|..::|:|..||.||                     
Zfish   319 SQLVYLDLSFNQLQTLTQHVFEDLGKLENLNLYHNKLTSLPNNM--------------------- 362

  Fly   266 VLRNAVNLSEVMADNNELEYLAQDEFASCSKVETLQMGCNHIKSLNSSLLPILK-LKNANFSFND 329
             .:|...|.|:..|:|.:..:..|.|...|.::.||:..|||..|:|.....|: ||..:.|.||
Zfish   363 -FKNLTMLKELQLDSNNISVIPPDLFHPLSALKDLQLDNNHISKLHSHTFKKLRQLKQLDISSND 426

  Fly   330 IEEFSMAELHGLRSLKTLQLSSNRIQRLLPDPRGVQEL-MLVNLDLDNNRIDSL-NGALAGLGNL 392
            :.:......|  ::||.|.|.:|.|..:  .....:.| .|.:|.|.:|.:..| ...|..|..|
Zfish   427 LTKIPNHLFH--KNLKELNLENNHISFI--SKFSFKNLHRLQSLKLSHNNLSKLYRELLTNLTRL 487

  Fly   393 RILNLAGNRLEHLQVGDFDGMIRLDILDLTGNQLAELKPLEMTLLPSLKILKVAYNNITKLEQD- 456
            |.|.|..|::|.:.||.|.|:..|.:|||:.|::..:.|.....|.:||.|.:::|.:..|.:| 
Zfish   488 RELLLNENQIETIPVGFFKGLENLRVLDLSNNKMHFILPDAFNDLSALKDLDLSFNFLHNLPEDI 552

  Fly   457 FKGLPVLCQANLTNNQISTISSELVTNTRCKNHNVPGKLEIHLDDNPIMCDVGLNELCRLMAVQE 521
            |..|..|.:.:|.||::..:.|.|.:       .:.|..|:|||.|.|            ..:..
Zfish   553 FASLRNLTKLHLQNNKLRYLPSRLFS-------ALVGLEELHLDRNYI------------QRIHP 598

  Fly   522 ARIRGRSQCFENDQEVCTVLPMLYNVNLPI-MVTNLKLTGREVPKPMVRVIVPSLIKANNELL-- 583
            .:..|..:..|.|.:...:..|.....:|: .:..:.|.|.......|.::..|....||..|  
Zfish   599 TQFEGLVKLHELDMKSNQLRSMEDGTLMPLRKLKRIHLDGNPWDCSTVVILYISQWFNNNTQLVK 663

  Fly   584 -PPLIAT---LGNPVLISTDLVN 602
             .|:.::   |.||.|..:.|:|
Zfish   664 TTPMCSSGQNLSNPALFPSSLLN 686

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltlNP_001261524.1 leucine-rich repeat 65..86 CDD:275380 6/28 (21%)
LRR_8 86..145 CDD:290566 19/82 (23%)
leucine-rich repeat 87..110 CDD:275380 9/22 (41%)
leucine-rich repeat 111..134 CDD:275380 6/22 (27%)
leucine-rich repeat 135..158 CDD:275380 6/46 (13%)
LRR_8 158..214 CDD:290566 20/58 (34%)
leucine-rich repeat 159..180 CDD:275380 7/20 (35%)
leucine-rich repeat 181..203 CDD:275380 10/24 (42%)
leucine-rich repeat 204..226 CDD:275380 5/22 (23%)
LRR_RI 226..451 CDD:238064 65/227 (29%)
leucine-rich repeat 227..249 CDD:275380 8/21 (38%)
leucine-rich repeat 250..272 CDD:275380 1/21 (5%)
leucine-rich repeat 273..296 CDD:275380 6/22 (27%)
leucine-rich repeat 297..315 CDD:275380 7/17 (41%)
LRR_8 319..402 CDD:290566 25/85 (29%)
leucine-rich repeat 320..335 CDD:275378 5/14 (36%)
leucine-rich repeat 344..366 CDD:275380 6/21 (29%)
leucine-rich repeat 367..391 CDD:275380 8/25 (32%)
LRR_8 369..426 CDD:290566 22/57 (39%)
leucine-rich repeat 392..415 CDD:275380 10/22 (45%)
leucine-rich repeat 416..439 CDD:275380 7/22 (32%)
LRR_8 438..>479 CDD:290566 12/41 (29%)
leucine-rich repeat 440..462 CDD:275380 8/22 (36%)
leucine-rich repeat 463..483 CDD:275380 6/19 (32%)
si:dkey-182i3.11XP_021322095.1 PLN00113 97..>617 CDD:331614 144/564 (26%)
leucine-rich repeat 129..152 CDD:275380 6/22 (27%)
leucine-rich repeat 153..176 CDD:275380 9/22 (41%)
leucine-rich repeat 177..200 CDD:275380 0/22 (0%)
leucine-rich repeat 201..224 CDD:275380 6/22 (27%)
leucine-rich repeat 225..248 CDD:275380 6/22 (27%)
leucine-rich repeat 249..272 CDD:275380 0/22 (0%)
leucine-rich repeat 273..296 CDD:275380 7/22 (32%)
leucine-rich repeat 297..320 CDD:275380 9/22 (41%)
leucine-rich repeat 321..344 CDD:275380 5/22 (23%)
leucine-rich repeat 345..368 CDD:275380 9/44 (20%)
leucine-rich repeat 369..392 CDD:275380 6/22 (27%)
leucine-rich repeat 393..438 CDD:275380 14/46 (30%)
leucine-rich repeat 417..436 CDD:275380 5/18 (28%)
leucine-rich repeat 439..462 CDD:275380 7/24 (29%)
leucine-rich repeat 463..486 CDD:275380 7/22 (32%)
leucine-rich repeat 487..510 CDD:275380 10/22 (45%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
leucine-rich repeat 535..558 CDD:275380 8/22 (36%)
leucine-rich repeat 559..582 CDD:275380 6/29 (21%)
leucine-rich repeat 583..606 CDD:275380 7/34 (21%)
leucine-rich repeat 607..628 CDD:275380 3/20 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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