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Protein Alignment CG8539 and Cpa5

DIOPT Version :9

Sequence 1:	NP_001261520.1	Gene:	CG8539 / 38842	FlyBaseID:	FBgn0035791	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_653120.1	Gene:	Cpa5 / 74649	MGIID:	1921899	Length:	436	Species:	Mus musculus

Alignment Length:	345	Identity:	100/345 - (28%)
Similarity:	163/345 - (47%)	Gaps:	41/345 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 VTIVVNQLSEAREVRRRRGLMLQLDNYLSY---DGIMQYLDELALSHSNRVTLKDVARTYENRA- 72
            :.:::::..:|....||........:|.||   |.|..::|.....|||.|:...:.:::|||:
Mouse   110 IQVLLDEERDAMAKSRRLERSTNSFSYSSYHTLDEIYSWIDNFVAEHSNLVSKIHIGKSFENRSI 174

  Fly    73 LKMAIITNGDGRPGKRVIFLDAALHSREWMTPAAALLTIHKLVVEFAEN---SDLLTDYDWHIMP 134
            |.:...|.|..||   .|::|..:|||||:|.|..:....|:|..:.::   ..:|...|..|..
Mouse   175 LVLKFSTGGPNRP---AIWIDTGIHSREWITHATGIWISQKIVNAYGKDHVLKRILNTMDIFIEI 236

  Fly   135 LANPDGYEYSRNTERYWRNTRTPNGG-NCFGTNLNRNFAVDWNVGF---PELKDPCDENYAGSSP 195
            :.||||:.::.:..|.||..::...| .|.|.:||||    |..||   ...|:||.|.|.|.:|
Mouse   237 VTNPDGFAFTHSMNRLWRKNKSSQPGIFCIGVDLNRN----WKAGFGGNGSNKNPCSETYRGPAP 297

  Fly   196 FSEVEARTVRDIMHGLVESKRAVMYLSLHTANRSVFYPWVYDTDPVSNQKEHDEIGRFVADRI-- 258
            .||.|...:.|.:.|....|..:   |:|:.::.|.||:.:..:||.|   |:|:.....|.:
Mouse   298 ESEPEVAAIVDFITGHGNFKAMI---SIHSYSQMVMYPYGHSLEPVPN---HEELFNLAKDAVKA 356

  Fly   259 ------LQSTGTFIKTWQYAKYAGTFGGTSMDYALLAGFPLSFVFEMSGTGRDHVEYKFFPPARD 317
                  :|.....|.|..|:.     .|.|:|:|..:|...:|.||:..||    :|.|..||..
Mouse   357 LNKVHGIQYIFGSISTTLYSA-----SGISVDWAYDSGIKYAFSFELRDTG----QYGFLLPASQ 412

  Fly   318 IRHLAEESWTGIKAFAEKTI 337
            |...|||:|..::...:.|:
Mouse   413 IVPTAEETWMALQTIMKHTL 432

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.