DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8539 and Cpa4

DIOPT Version :9

Sequence 1:NP_001261520.1 Gene:CG8539 / 38842 FlyBaseID:FBgn0035791 Length:385 Species:Drosophila melanogaster
Sequence 2:XP_017177239.1 Gene:Cpa4 / 71791 MGIID:1919041 Length:469 Species:Mus musculus


Alignment Length:329 Identity:103/329 - (31%)
Similarity:166/329 - (50%) Gaps:29/329 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SEAREVRRRRGLMLQLD-NYLSY---DGIMQYLDELALSHSNRVTLKDVARTYENRALKMAIITN 80
            :|..|::...|:....| ||.:|   :.|...:|.:|......|:...:..|:|.|.:.:...:.
Mouse   149 NEDEEMQHNEGIERSGDFNYGAYHPLEAIYHEMDSIATDFPELVSRVKIGETFEKRPMYVLKFST 213

  Fly    81 GDGRPGKR-VIFLDAALHSREWMTPAAALLTIHKLVVEFAEN---SDLLTDYDWHIMPLANPDGY 141
            |.|:  || .|:|:|.:|:|||::.|.|:.|..|:|.::.::   :.:|...|..::|:||||||
Mouse   214 GGGK--KRPAIWLNAGIHAREWISQATAIWTARKIVTDYKKDPAITSILKKVDIFLLPVANPDGY 276

  Fly   142 EYSRNTERYWRNTRTPN-GGNCFGTNLNRNFAVDWNVGFP---ELKDPCDENYAGSSPFSEVEAR 202
            .|:::..|.||.||:.| |..|.|.:.|||    ||..|.   ...:||.|.|.||.|.||||.:
Mouse   277 VYTQSQNRLWRKTRSRNPGSRCVGADPNRN----WNASFAGEGTSDNPCSEVYHGSHPNSEVEVK 337

  Fly   203 TVRDIM--HGLVESKRAVMYLSLHTANRSVFYPWVYDTDPVSNQKEHDEIGRFVADRILQSTGTF 265
            :|.|.:  ||..:     .::.||:.::.:.||:.|......:.:|.|::.|..|..:...:||.
Mouse   338 SVVDFIQKHGNFK-----CFIDLHSYSQLLMYPYGYTVKKAPDAEELDDVARNAAQALASLSGTK 397

  Fly   266 IKTWQYAKYAGTFGGTSMDYALLAGFPLSFVFEMSGTGRDHVEYKFFPPARDIRHLAEESWTGIK 330
            .:............|:|:|:|...|...:|.||:..||    .|.|..||..|...|||:|.|:|
Mouse   398 YRVGPTCTTVYPASGSSVDWAYDNGIKYAFTFELRDTG----YYGFLLPASQIIPTAEETWLGLK 458

  Fly   331 AFAE 334
            ...|
Mouse   459 TIME 462

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG8539NP_001261520.1 M14_CP_A-B_like 38..335 CDD:199844 98/310 (32%)