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Protein Alignment CG8539 and Cpa1

DIOPT Version :9

Sequence 1:	NP_001261520.1	Gene:	CG8539 / 38842	FlyBaseID:	FBgn0035791	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	346	Identity:	98/346 - (28%)
Similarity:	169/346 - (48%)	Gaps:	36/346 - (10%)

- Green bases have known domain annotations that are detailed below.

  Fly    12 VTIVVNQLSEAREVRRRRGLMLQLDNYLSY---DGIMQYLDELALSHSNRVTLKDVARTYENRAL 73
            |.:::::..:.....:.|.|.....||.:|   |.|.:::|.|...|...|:...:..|:|.|.:
  Rat    93 VQLLLDEEKQQMSAFQARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVSKIQIGNTFEGRPI 157

  Fly    74 K-MAIITNGDGRPGKRVIFLDAALHSREWMTPAAALLTIHKLVVEFAEN---SDLLTDYDWHIMP 134
            . :...|.|..||   .|::|..:|||||:|.|:.:....|:..::.::   :.:|.:.|..:..
  Rat   158 HVLKFSTGGTNRP---AIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMDIFLEI 219

  Fly   135 LANPDGYEYSRNTERYWRNTRTPNGGN-CFGTNLNRNFAVDWNVGF---PELKDPCDENYAGSSP 195
            :.||||:.|:..|.|.||.||:...|: |.|.:.|||    |:.||   ....:||.|.|.|..|
  Rat   220 VTNPDGFAYTHKTNRMWRKTRSHTQGSLCVGVDPNRN----WDAGFGMAGASSNPCSETYRGKFP 280

  Fly   196 FSEVEARTVRDIM--HGLVESKRAVMYLSLHTANRSVFYPWVYDTDPVSNQKEHDEIGRFVADRI 258
            .||||.:::.|.:  ||.:::     ::|:|:.::.:.||:.|.::|..:|.|.|::.:.....:
  Rat   281 NSEVEVKSIVDFVTSHGNIKA-----FISIHSYSQLLLYPYGYTSEPAPDQAELDQLAKSAVTAL 340

  Fly   259 LQSTGTFIKTWQYAKYAGTF---GGTSMDYALLAGFPLSFVFEMSGTGRDHVEYKFFPPARDIRH 320
            ....||..|   |.....|.   .|:::|:....|...||.||:..||.    ..|..||..|..
  Rat   341 TSLHGTKFK---YGSIIDTIYQASGSTIDWTYSQGIKYSFTFELRDTGL----RGFLLPASQIIP 398

  Fly   321 LAEESWTGIKAFAEKTIEKYP 341
            .|||:|..:....:.|: |:|
  Rat   399 TAEETWLALLTIMDHTV-KHP 418

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.