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Protein Alignment CG8539 and Cpa2

DIOPT Version :9

Sequence 1:	NP_001261520.1	Gene:	CG8539 / 38842	FlyBaseID:	FBgn0035791	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_001019869.1	Gene:	Cpa2 / 232680	MGIID:	3617840	Length:	417	Species:	Mus musculus

Alignment Length:	337	Identity:	105/337 - (31%)
Similarity:	172/337 - (51%)	Gaps:	26/337 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 VLVTIVVNQLSEARE-----VRRRRGLMLQLDNYLSYDGIMQYLDELALSHSNRVTLKDVARTYE 69
            :::..|...|.:.||     .:|.||.......|.:.:.|.|.:|.|...:...|:..::..::|
Mouse    88 IMIEDVQVLLDQEREEMLFNQQRERGTNFNFGAYHTLEEIYQEMDNLVAENPGLVSKVNIGSSFE 152

  Fly    70 NRALKMAIITNGDGRPGKRVIFLDAALHSREWMTPAAALLTIHKLVVEFAEN---SDLLTDYDWH 131
            ||.:.:...:.|..:|   .|:|||.:|:|||:|.|.||.|.:|:..::..:   :.||...|..
Mouse   153 NRPMNVLKFSTGGDKP---AIWLDAGIHAREWVTQATALWTANKIASDYGTDPAITSLLNTLDVF 214

  Fly   132 IMPLANPDGYEYSRNTERYWRNTRTPNGGN-CFGTNLNRNFAVDWNVGFP-ELKDPCDENYAGSS 194
            ::|:.|||||.:|:.:.|.||.||:...|: |.|.:.|||:  |.|.|.| ...:||.::|.|.|
Mouse   215 LLPVTNPDGYVFSQTSNRMWRKTRSKRSGSFCVGVDPNRNW--DANFGGPGASSNPCSDSYHGPS 277

  Fly   195 PFSEVEARTVRDIM--HGLVESKRAVMYLSLHTANRSVFYPWVYDTDPVSNQKEHDEIGRFVADR 257
            |.||||.:::.|.:  ||.|::     :::||:.::.:.:|:.|......:..|.||:.:..|..
Mouse   278 PNSEVEVKSIVDFIKSHGKVKA-----FITLHSYSQLLMFPYGYKCAKPDDFNELDEVAQRAAQS 337

  Fly   258 ILQSTGTFIKTWQYAKYAGTFGGTSMDYALLAGFPLSFVFEMSGTGRDHVEYKFFPPARDIRHLA 322
            :.:..||..|............|.|:|:|...|...||.||:..||    .|.|..||:.|...|
Mouse   338 LKRLHGTSYKVGPICSVIYQASGGSIDWAYDLGIKYSFAFELRDTG----YYGFLLPAKQILPTA 398

  Fly   323 EESWTGIKAFAE 334
            ||:|.|:|...|
Mouse   399 EETWLGLKTIME 410

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.