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Protein Alignment CG8539 and Cpb2

DIOPT Version :9

Sequence 1:	NP_001261520.1	Gene:	CG8539 / 38842	FlyBaseID:	FBgn0035791	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_446069.1	Gene:	Cpb2 / 113936	RGDID:	71035	Length:	422	Species:	Rattus norvegicus

Alignment Length:	310	Identity:	92/310 - (29%)
Similarity:	150/310 - (48%)	Gaps:	26/310 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    36 DNYLSYDGIMQYLDELALSHSNRVTLKDVARTYENRALKMAIITNGDGRPGKRVIFLDAALHSRE 100
            :.|.|.:.|..:::.:...|.:.:....:..:||...|.:..::..:.|. |..|::|..:|:||
  Rat   120 EQYHSLNEIYSWIEVITEQHPDMLQKIYIGSSYEKYPLYVLKVSGKEHRV-KNAIWIDCGIHARE 183

  Fly   101 WMTPAAALLTIHKLVVEF--AEN--SDLLTDYDWHIMPLANPDGYEYSRNTERYWRNTRTPNGGN 161
            |::||..|..| ..|.:|  .||  :.||...|::|||:.|.|||:|:....|.||..|:.:..|
  Rat   184 WISPAFCLWFI-GYVTQFHGKENTYTRLLRHVDFYIMPVMNVDGYDYTWKKNRMWRKNRSVHMNN 247

  Fly   162 -CFGTNLNRNFA-VDW-NVGFPELKDPCDENYAGSSPFSEVEARTVRDIMHGLVESKRAVMYLSL 223
             |.||:|||||| ..| ..|.....  |.|.|.|..|.||.|.:.|.|.:...:...:|  |:|:
  Rat   248 RCVGTDLNRNFASKHWCEKGASSFS--CSETYCGLYPESEPEVKAVADFLRRNINHIKA--YISM 308

  Fly   224 HTANRSVFYPWVYDTDPVSNQKEHDEIGRFVADRILQSTGTFIKTWQYAKYAGTFG-----GTSM 283
            |:.::.:.:|:.|:.   |..|:|:|:. .||...:::..:..|..:|...:|:..     |.|.
  Rat   309 HSYSQQILFPYSYNR---SKSKDHEELS-LVASEAVRAIESINKNTRYTHGSGSESLYLAPGGSD 369

  Fly   284 DYALLAGFPLSFVFEMSGTGRDHVEYKFFPPARDIRHLAEESWTGIKAFA 333
            |:....|...||..|:..|||    |.|..|.|.|:....|:...:...|
  Rat   370 DWIYDLGIKYSFTIELRDTGR----YGFLLPERFIKPTCAEALAAVSKIA 415

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.