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Protein Alignment CG8539 and Cpa1

DIOPT Version :9

Sequence 1:	NP_001261520.1	Gene:	CG8539 / 38842	FlyBaseID:	FBgn0035791	Length:	385	Species:	Drosophila melanogaster
Sequence 2:	NP_079626.2	Gene:	Cpa1 / 109697	MGIID:	88478	Length:	419	Species:	Mus musculus

Alignment Length:	351	Identity:	99/351 - (28%)
Similarity:	169/351 - (48%)	Gaps:	39/351 - (11%)

- Green bases have known domain annotations that are detailed below.

  Fly    10 VLVTIVVNQLSEARE---VRRRRGLMLQLDNYLSY---DGIMQYLDELALSHSNRVTLKDVARTY 68
            :::..|.:.|.|.::   ..:.|.|.....||.:|   |.|.:::|.|...|...|:...:..|:
Mouse    88 IMIEDVQSLLDEEKQQMSAFQARALSTDAFNYATYHTLDEIYEFMDLLVTEHPQLVSKIQIGSTF 152

  Fly    69 ENRALK-MAIITNGDGRPGKRVIFLDAALHSREWMTPAAALLTIHKLVVEFAENSDL---LTDYD 129
            |.|.:. :...|.|..||   .|::|..:|||||:|.|:.:....|:..::.:...|   |.:.|
Mouse   153 EGRPINVLKFSTGGTNRP---AIWIDTGIHSREWVTQASGVWFAKKITKDYGQEPTLTAILDNMD 214

  Fly   130 WHIMPLANPDGYEYSRNTERYWRNTRTPNGGN-CFGTNLNRNFAVDWNVGF---PELKDPCDENY 190
            ..:..:.||||:.|:..|.|.||.||:...|: |.|.:.|||    |:..|   ....:||.|.|
Mouse   215 IFLEIVTNPDGFVYTHKTNRMWRKTRSHTEGSLCVGVDPNRN----WDAAFGMPGASSNPCSETY 275

  Fly   191 AGSSPFSEVEARTVRDIM--HGLVESKRAVMYLSLHTANRSVFYPWVYDTDPVSNQKEHDEIGRF 253
            .|..|.||||.:::.|.:  ||.:::     ::|:|:.::.:.||:.|.::|..:::|.|::.:.
Mouse   276 RGKFPNSEVEVKSIVDFVTSHGNIKA-----FISIHSYSQLLLYPYGYTSEPAPDKEELDQLAKS 335

  Fly   254 VADRILQSTGTFIKTWQYAKYAGTF---GGTSMDYALLAGFPLSFVFEMSGTGRDHVEYKFFPPA 315
            ....:....||..|   |.....|.   .|:::|:....|...||.||:..||.    ..|..||
Mouse   336 AVTALTSLHGTKFK---YGSIIDTIYQASGSTIDWTYSQGIKYSFTFELRDTGL----RGFLLPA 393

  Fly   316 RDIRHLAEESWTGIKAFAEKTIEKYP 341
            ..|...|||:|..:....:.|: |:|
Mouse   394 SQIIPTAEETWLALLTIMDHTV-KHP 418

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.