DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sphinx2 and Hgf

DIOPT Version :9

Sequence 1:NP_001303408.1 Gene:sphinx2 / 38833 FlyBaseID:FBgn0052382 Length:253 Species:Drosophila melanogaster
Sequence 2:NP_058713.1 Gene:Hgf / 24446 RGDID:2794 Length:728 Species:Rattus norvegicus


Alignment Length:253 Identity:59/253 - (23%)
Similarity:100/253 - (39%) Gaps:39/253 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CEKNKLSPRITGGYRAKPYTIIYLVGIVYAKSPLSSLKFGAGTIISNQWILTVKEVL-----IFK 76
            |.|.| ..|:..|...:. |:.::|.:.|....:.     .|::|...|:||.::..     ..|
  Rat   488 CAKTK-QLRVVNGIPTQT-TVGWMVSLKYRNKHIC-----GGSLIKESWVLTARQCFPARNKDLK 545

  Fly    77 YIEAHFG---------SKRAFWGYDILRIYRENFYFHYDKTRIIALVKCPYQKFDRRMSRVRVPA 132
            ..||..|         .||.    .||.|  ....:..:.:.::.|........|..:|.:.:|:
  Rat   546 DYEAWLGIHDVHERGEEKRK----QILNI--SQLVYGPEGSDLVLLKLARPAILDNFVSTIDLPS 604

  Fly   133 YGARFERYVGNMTMVCGWGTDKRKVRLPTWMRCVEVEVMNNTECAKYH---TPLKWYEMCTSGEG 194
            ||.....  .....:.|||. ...:.....:|...:.:|.|.:|:::|   ..|...|:|...|.
  Rat   605 YGCTIPE--KTTCSIYGWGY-TGLINADGLLRVAHLYIMGNEKCSQHHQGKVTLNESELCAGAEK 666

  Fly   195 F-KGVCEGDMGGAVVTMGPNPTFI-GIIWLMP-TNCSI-GYPSVHIRVSDHIKWIKHV 248
            . .|.||||.||.::........: |:|  :| ..|:| ..|.:.:||:.:.|||..|
  Rat   667 IGSGPCEGDYGGPLICEQHKMRMVLGVI--VPGRGCAIPNRPGIFVRVAYYAKWIHKV 722

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sphinx2NP_001303408.1 Tryp_SPc 25..245 CDD:214473 53/240 (22%)
Tryp_SPc 26..248 CDD:304450 54/242 (22%)
HgfNP_058713.1 PAN_APPLE 41..123 CDD:238074
KR 127..209 CDD:214527
KR 211..289 CDD:214527
KR 305..385 CDD:214527
KR 389..471 CDD:238056
Tryp_SPc 495..719 CDD:214473 53/240 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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