DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rac2 and rnd1b

DIOPT Version :9

Sequence 1:NP_001261517.1 Gene:Rac2 / 38831 FlyBaseID:FBgn0014011 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_001037861.1 Gene:rnd1b / 553414 ZFINID:ZDB-GENE-060315-7 Length:232 Species:Danio rerio


Alignment Length:169 Identity:77/169 - (45%)
Similarity:107/169 - (63%) Gaps:1/169 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRP 69
            |.|:|||...|||.:|.....:.:|..|:||||:||:|.:.:|.:.:.|.||||:|...||.:||
Zfish    15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLELDDQRVELSLWDTSGSPYYDNVRP 79

  Fly    70 LSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKL 134
            |.|..:|..|:||.:..|..|::...||..|:...|||..|:|||.|.|||.|..|:.:|.::|.
Zfish    80 LCYSDSDAVLLCFDISRPDIFDSGLKKWRAEILDFCPSTRILLVGCKTDLRTDVCTLMELSNQKQ 144

  Fly   135 TPITYPQGLAMAKEIAAVKYLECSALT-QKGLKTVFDEA 172
            ||||:.||.||||::.|..||||||.| :|.:.:||..|
Zfish   145 TPITHEQGSAMAKQLGAEAYLECSAFTSEKSIHSVFRTA 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rac2NP_001261517.1 Rac1_like 3..176 CDD:206663 77/169 (46%)
rnd1bNP_001037861.1 Rnd1_Rho6 1..232 CDD:206737 77/169 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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