DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rac2 and Rnd1

DIOPT Version :9

Sequence 1:NP_001261517.1 Gene:Rac2 / 38831 FlyBaseID:FBgn0014011 Length:192 Species:Drosophila melanogaster
Sequence 2:NP_766200.1 Gene:Rnd1 / 223881 MGIID:2444878 Length:232 Species:Mus musculus


Alignment Length:175 Identity:70/175 - (40%)
Similarity:107/175 - (61%) Gaps:3/175 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDAKPINLGLWDTAGQEDYDRLRP 69
            |.|:|||...|||.:|.....:.:|..|:||||:||:|.:..:.:.:.|.||||:|...||.:||
Mouse    15 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRP 79

  Fly    70 LSYPQTDVFLICFSLVNPASFENVRAKWFPEVRHHCPSVPIILVGTKLDLRDDKQTIEKLKDKKL 134
            |.|..:|..|:||.:..|.:.::...||..|:..:|||..::|:|.|.|||.|..|:.:|..:|.
Mouse    80 LCYSDSDAVLLCFDISRPETMDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQ 144

  Fly   135 TPITYPQGLAMAKEIAAVKYLECSALT-QKGLKTVFDEAIRSVLC 178
            .||:|.||.|:||::.|..|||.||.| :..:.::|..|  |::|
Mouse   145 APISYEQGCAIAKQLGAEIYLEGSAFTSETSIHSIFRTA--SMVC 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rac2NP_001261517.1 Rac1_like 3..176 CDD:206663 68/171 (40%)
Rnd1NP_766200.1 P-loop_NTPase 1..232 CDD:304359 70/175 (40%)
RHO 16..190 CDD:197554 69/174 (40%)
Effector region. /evidence=ECO:0000255 42..50 5/7 (71%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0393
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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