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Protein Alignment CG8560 and Cpa2

DIOPT Version :9

Sequence 1:	NP_001261516.1	Gene:	CG8560 / 38830	FlyBaseID:	FBgn0035781	Length:	418	Species:	Drosophila melanogaster
Sequence 2:	NP_001013101.2	Gene:	Cpa2 / 296959	RGDID:	1305563	Length:	417	Species:	Rattus norvegicus

Alignment Length:	424	Identity:	156/424 - (36%)
Similarity:	224/424 - (52%)	Gaps:	26/424 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 VVLLLASV---ALAVENYDGYKIYDINARNAFEKQLLLRLSGNE--AYDFFDLPRSLDASSRVMV 66
            :.||||::   ....|.:.|.::.:|...:..:.:.||:|...|  ..||:..|.....:..|.|
  Rat     3 LTLLLAALLGYIYCQETFVGDQVLEIIPSHEEQIRTLLQLEAEEHLELDFWKSPTIPGETVHVRV 67

  Fly    67 KPEDQEGFEHLLEKYGVNYSVINENFGESLRQERDE---NQNQRLMNLRSAERSVSFKAFHRHAE 128
            .....:..:..||..|::||::.|:....|.|||:|   ||.      |....:.:|:|:|...|
  Rat    68 PFASIQAVKVFLESQGIDYSIMIEDVQVLLDQEREEMLFNQQ------RERGGNFNFEAYHTLEE 126

  Fly   129 INAYLDELAAAYPSRVSVQVAGKSYENRDIKTITI-TNGDGKTGKNVVFLDAGIHAREWIAHAGA 192
            |...:|.|.|..|..||....|.|:|||.:..:.. |.||    |..::||||||||||:..|.|
  Rat   127 IYQEMDNLVAENPGLVSKVNIGSSFENRPMNVLKFSTGGD----KPAIWLDAGIHAREWVTQATA 187

  Fly   193 LYVIHQLVENFA---ANSELLKDFDWVILPVVNPDGYEYSHTTTRMWRKTR-KPISSACYGTDAN 253
            |:..:::..::.   |.:.||...|..:|||.|||||.:|.||.||||||| |...|.|.|.|.|
  Rat   188 LWTANKIASDYGTDPAITSLLNTLDIFLLPVTNPDGYVFSQTTNRMWRKTRSKRSGSGCVGVDPN 252

  Fly   254 RNFDFHWGEVGASSYSCSDTFKGETAFSEPETQLIRDILLSLTGRGKFYLTLHSYGNYLLYPWGW 318
            ||:|.::|..||||..|||::.|....||.|.:.|.|.:.| .|:.|.::|||||...|::|:|:
  Rat   253 RNWDANFGGPGASSSPCSDSYHGPKPNSEVEVKSIVDFIKS-HGKVKAFITLHSYSQLLMFPYGY 316

  Fly   319 TSALPSSWRDNDEVAQGGADAIKSATGTKYTVGSSTNVLYAAAGGSDDYAFGVANFPVSITMEL- 382
            ....|..:.:.|||||..|.|:|...||.|.||...:|:|.|:|||.|:|:.: ....|...||
  Rat   317 KCTKPDDFNELDEVAQKAAQALKRLHGTSYKVGPICSVIYQASGGSIDWAYDL-GIKYSFAFELR 380

  Fly   383 PAGGTGFNPSTSQIEGFVSETWVGIKAMAQKVAD 416
            ..|..||.....||.....|||:|:|.:.:.|.|
  Rat   381 DTGFYGFLLPAKQILPTAEETWLGLKTIMEHVRD 414

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.